2iov

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{{Seed}}
 
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[[Image:2iov.png|left|200px]]
 
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==Bright-state structure of the reversibly switchable fluorescent protein Dronpa==
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The line below this paragraph, containing "STRUCTURE_2iov", creates the "Structure Box" on the page.
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<StructureSection load='2iov' size='340' side='right'caption='[[2iov]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2iov]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Echinophyllia_sp._SC22 Echinophyllia sp. SC22]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IOV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IOV FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GYC:[(4Z)-2-[(1R)-1-AMINO-2-MERCAPTOETHYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>GYC</scene></td></tr>
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{{STRUCTURE_2iov| PDB=2iov | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2iov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iov OCA], [https://pdbe.org/2iov PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2iov RCSB], [https://www.ebi.ac.uk/pdbsum/2iov PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2iov ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q5TLG6_9CNID Q5TLG6_9CNID]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/io/2iov_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2iov ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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RSFPs (reversibly switchable fluorescent proteins) may be repeatedly converted between a fluorescent and a non-fluorescent state by irradiation and have attracted widespread interest for many new applications. The RSFP Dronpa may be switched with blue light from a fluorescent state into a non-fluorescent state, and back again with UV light. To obtain insight into the underlying molecular mechanism of this switching, we have determined the crystal structure of the fluorescent equilibrium state of Dronpa. Its bicyclic chromophore is formed spontaneously from the Cys62-Tyr63-Gly64 tripeptide. In the fluorescent state, it adopts a slightly non-coplanar cis conformation within the interior of a typical GFP (green fluorescent protein) b-can fold. Dronpa shares some structural features with asFP595, another RSFP whose chromophore has previously been demonstrated to undergo a cis-trans isomerization upon photoswitching. Based on the structural comparison with asFP595, we have generated new Dronpa variants with an up to more than 1000-fold accelerated switching behaviour. The mutations which were introduced at position Val157 or Met159 apparently reduce the steric hindrance for a cis-trans isomerization of the chromophore, thus lowering the energy barrier for the blue light-driven on-to-off transition. The findings reported in the present study support the view that a cis-trans isomerization is one of the key events common to the switching mechanism in RSFPs.
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===Bright-state structure of the reversibly switchable fluorescent protein Dronpa===
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1.8 A bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants.,Stiel AC, Trowitzsch S, Weber G, Andresen M, Eggeling C, Hell SW, Jakobs S, Wahl MC Biochem J. 2007 Feb 15;402(1):35-42. PMID:17117927<ref>PMID:17117927</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2iov" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_17117927}}, adds the Publication Abstract to the page
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*[[Dronpa|Dronpa]]
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(as it appears on PubMed at http://www.pubmed.gov), where 17117927 is the PubMed ID number.
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*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
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== References ==
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{{ABSTRACT_PUBMED_17117927}}
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<references/>
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__TOC__
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==About this Structure==
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</StructureSection>
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2IOV is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Echinophyllia_sp._sc22 Echinophyllia sp. sc22]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IOV OCA].
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[[Category: Echinophyllia sp. SC22]]
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[[Category: Large Structures]]
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==Reference==
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[[Category: Andresen M]]
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<ref group="xtra">PMID:17117927</ref><references group="xtra"/>
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[[Category: Eggeling C]]
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[[Category: Echinophyllia sp. sc22]]
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[[Category: Hell SW]]
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[[Category: Andresen, M.]]
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[[Category: Jakobs S]]
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[[Category: Eggeling, C.]]
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[[Category: Stiel AC]]
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[[Category: Hell, S W.]]
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[[Category: Trowitzsch S]]
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[[Category: Jakobs, S.]]
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[[Category: Wahl MC]]
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[[Category: Stiel, A C.]]
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[[Category: Weber G]]
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[[Category: Trowitzsch, S.]]
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[[Category: Wahl, M C.]]
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[[Category: Weber, G.]]
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[[Category: Green-fluorescent protein-like protein]]
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[[Category: Luminescent protein]]
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[[Category: Reversibly switchable fluorescent protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 1 09:49:40 2009''
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Current revision

Bright-state structure of the reversibly switchable fluorescent protein Dronpa

PDB ID 2iov

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