1b2p

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(New page: 200px<br /><applet load="1b2p" size="450" color="white" frame="true" align="right" spinBox="true" caption="1b2p, resolution 1.7&Aring;" /> '''NATIVE MANNOSE-SPECIF...)
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[[Image:1b2p.gif|left|200px]]<br /><applet load="1b2p" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1b2p, resolution 1.7&Aring;" />
 
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'''NATIVE MANNOSE-SPECIFIC BULB LECTIN FROM SCILLA CAMPANULATA (BLUEBELL) AT 1.7 ANGSTROMS RESOLUTION'''<br />
 
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==Overview==
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==NATIVE MANNOSE-SPECIFIC BULB LECTIN FROM SCILLA CAMPANULATA (BLUEBELL) AT 1.7 ANGSTROMS RESOLUTION==
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The X-ray crystal structure of native Scilla campanulata agglutinin, a, mannose-specific lectin from bluebell bulbs and a member of the Liliaceae, family, has been determined by molecular replacement and refined to an R, value of 0.186 at 1.7 A resolution. The lectin crystallizes in space group, P21212 with unit-cell parameters a = 70. 42, b = 92.95, c = 46.64 A. The, unit cell contains eight protein molecules of Mr = 13143 Da (119, amino-acid residues). The asymmetric unit comprises two chemically, identical molecules, A and B, related by a non-crystallographic twofold, axis perpendicular to c. This dimer further associates by crystallographic, twofold symmetry to form a tetramer. The fold of the polypeptide backbone, closely resembles that found in the lectins from Galanthus nivalis, (snowdrop) and Hippeastrum (amaryllis) and contains a threefold symmetric, beta-prism made up of three antiparallel four-stranded beta-sheets. Each, of the four-stranded beta-sheets (I, II and III) possesses a potential, saccharide-binding site containing conserved residues; however, site II, has two mutations relative to sites I and III which may prevent ligation, at this site. Our study provides the first accurate and detailed, description of a native (unligated) structure from this superfamily of, mannose-specific bulb lectins and will allow comparisons with a number of, lectin-saccharide complexes which have already been determined or are, currently under investigation.
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<StructureSection load='1b2p' size='340' side='right'caption='[[1b2p]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1b2p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Hyacinthoides_hispanica Hyacinthoides hispanica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B2P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B2P FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b2p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b2p OCA], [https://pdbe.org/1b2p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b2p RCSB], [https://www.ebi.ac.uk/pdbsum/1b2p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b2p ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9ZP49_HYAHI Q9ZP49_HYAHI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b2/1b2p_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1b2p ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The X-ray crystal structure of native Scilla campanulata agglutinin, a mannose-specific lectin from bluebell bulbs and a member of the Liliaceae family, has been determined by molecular replacement and refined to an R value of 0.186 at 1.7 A resolution. The lectin crystallizes in space group P21212 with unit-cell parameters a = 70. 42, b = 92.95, c = 46.64 A. The unit cell contains eight protein molecules of Mr = 13143 Da (119 amino-acid residues). The asymmetric unit comprises two chemically identical molecules, A and B, related by a non-crystallographic twofold axis perpendicular to c. This dimer further associates by crystallographic twofold symmetry to form a tetramer. The fold of the polypeptide backbone closely resembles that found in the lectins from Galanthus nivalis (snowdrop) and Hippeastrum (amaryllis) and contains a threefold symmetric beta-prism made up of three antiparallel four-stranded beta-sheets. Each of the four-stranded beta-sheets (I, II and III) possesses a potential saccharide-binding site containing conserved residues; however, site II has two mutations relative to sites I and III which may prevent ligation at this site. Our study provides the first accurate and detailed description of a native (unligated) structure from this superfamily of mannose-specific bulb lectins and will allow comparisons with a number of lectin-saccharide complexes which have already been determined or are currently under investigation.
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==About this Structure==
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Structure of the native (unligated) mannose-specific bulb lectin from Scilla campanulata (bluebell) at 1.7 A resolution.,Wood SD, Wright LM, Reynolds CD, Rizkallah PJ, Allen AK, Peumans WJ, Van Damme EJ Acta Crystallogr D Biol Crystallogr. 1999 Jul;55(Pt 7):1264-72. PMID:10393293<ref>PMID:10393293</ref>
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1B2P is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Hyacinthoides_hispanica Hyacinthoides hispanica]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1B2P OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structure of the native (unligated) mannose-specific bulb lectin from Scilla campanulata (bluebell) at 1.7 A resolution., Wood SD, Wright LM, Reynolds CD, Rizkallah PJ, Allen AK, Peumans WJ, Van Damme EJ, Acta Crystallogr D Biol Crystallogr. 1999 Jul;55(Pt 7):1264-72. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10393293 10393293]
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</div>
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[[Category: Hyacinthoides hispanica]]
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<div class="pdbe-citations 1b2p" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Allen, A.K.]]
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[[Category: Damme, E.J.M.Van.]]
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[[Category: Peumans, W.J.]]
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[[Category: Reynolds, C.D.]]
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[[Category: Rizkallah, P.J.]]
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[[Category: Wood, S.D.]]
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[[Category: Wright, L.M.]]
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[[Category: aglutinin]]
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[[Category: bluebell bulbs]]
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[[Category: mannose-binding lectin]]
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[[Category: monocot]]
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[[Category: protein- carbohydrate interactions]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sat Nov 24 23:38:27 2007''
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==See Also==
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*[[Agglutinin 3D structures|Agglutinin 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Hyacinthoides hispanica]]
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[[Category: Large Structures]]
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[[Category: Allen AK]]
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[[Category: Peumans WJ]]
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[[Category: Reynolds CD]]
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[[Category: Rizkallah PJ]]
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[[Category: Van Damme EJM]]
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[[Category: Wood SD]]
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[[Category: Wright LM]]

Current revision

NATIVE MANNOSE-SPECIFIC BULB LECTIN FROM SCILLA CAMPANULATA (BLUEBELL) AT 1.7 ANGSTROMS RESOLUTION

PDB ID 1b2p

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