3gyt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:57, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3gyt.jpg|left|200px]]
 
-
<!--
+
==Nuclear receptor DAF-12 from parasitic nematode Strongyloides stercoralis in complex with its physiological ligand dafachronic acid delta 4==
-
The line below this paragraph, containing "STRUCTURE_3gyt", creates the "Structure Box" on the page.
+
<StructureSection load='3gyt' size='340' side='right'caption='[[3gyt]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3gyt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Strongyloides_stercoralis Strongyloides stercoralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GYT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GYT FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DL4:(14BETA,17ALPHA,25R)-3-OXOCHOLEST-4-EN-26-OIC+ACID'>DL4</scene></td></tr>
-
{{STRUCTURE_3gyt| PDB=3gyt | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gyt OCA], [https://pdbe.org/3gyt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gyt RCSB], [https://www.ebi.ac.uk/pdbsum/3gyt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gyt ProSAT]</span></td></tr>
-
 
+
</table>
-
===Nuclear receptor DAF-12 from parasitic nematode Strongyloides stercoralis in complex with its physiological ligand dafachronic acid delta 4===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9XZJ5_STRER Q9XZJ5_STRER]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_19497877}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 19497877 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/3gyt_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_19497877}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
3GYT is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Strongyloides_stercoralis Strongyloides stercoralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GYT OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gyt ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:19497877</ref><references group="xtra"/>
+
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
[[Category: Strongyloides stercoralis]]
[[Category: Strongyloides stercoralis]]
-
[[Category: Auchus, R J.]]
+
[[Category: Auchus RJ]]
-
[[Category: Conneely, A.]]
+
[[Category: Conneely A]]
-
[[Category: Kliewer, S A.]]
+
[[Category: Kliewer SA]]
-
[[Category: Mangelsdorf, D J.]]
+
[[Category: Mangelsdorf DJ]]
-
[[Category: Motola, D L.]]
+
[[Category: Motola DL]]
-
[[Category: Ogata, C.]]
+
[[Category: Ogata C]]
-
[[Category: Sharma, K K.]]
+
[[Category: Sharma KK]]
-
[[Category: Suino-Powell, K.]]
+
[[Category: Suino-Powell K]]
-
[[Category: Wang, Z.]]
+
[[Category: Wang Z]]
-
[[Category: Xu, H E.]]
+
[[Category: Xu HE]]
-
[[Category: Zhou, X E.]]
+
[[Category: Zhou XE]]
-
[[Category: Dafachronic acid]]
+
-
[[Category: Dna-binding]]
+
-
[[Category: Ligand binding domain]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Nematode]]
+
-
[[Category: Nuclear receptor]]
+
-
[[Category: Nucleus]]
+
-
[[Category: Receptor]]
+
-
[[Category: Src1]]
+
-
[[Category: Strongyloides stercorali]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+
-
[[Category: Zinc]]
+
-
[[Category: Zinc-finger]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 8 09:30:42 2009''
+

Current revision

Nuclear receptor DAF-12 from parasitic nematode Strongyloides stercoralis in complex with its physiological ligand dafachronic acid delta 4

PDB ID 3gyt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gyt"
Personal tools