3i6v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:04, 21 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3i6v.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of a periplasmic His/Glu/Gln/Arg/opine family-binding protein from Silicibacter pomeroyi in complex with lysine==
-
The line below this paragraph, containing "STRUCTURE_3i6v", creates the "Structure Box" on the page.
+
<StructureSection load='3i6v' size='340' side='right'caption='[[3i6v]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3i6v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I6V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I6V FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LYS:LYSINE'>LYS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
{{STRUCTURE_3i6v| PDB=3i6v | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i6v OCA], [https://pdbe.org/3i6v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i6v RCSB], [https://www.ebi.ac.uk/pdbsum/3i6v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i6v ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5LTV6_RUEPO Q5LTV6_RUEPO]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i6/3i6v_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i6v ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of a periplasmic His/Glu/Gln/Arg/opine family-binding protein from Silicibacter pomeroyi in complex with lysine===
+
==See Also==
-
 
+
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3I6V is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I6V OCA].
+
[[Category: Large Structures]]
[[Category: Ruegeria pomeroyi]]
[[Category: Ruegeria pomeroyi]]
-
[[Category: Almo, S C.]]
+
[[Category: Almo SC]]
-
[[Category: Bain, K T.]]
+
[[Category: Bain KT]]
-
[[Category: Bonanno, J B.]]
+
[[Category: Bonanno JB]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley SK]]
-
[[Category: Miller, S.]]
+
[[Category: Miller S]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[[Category: Romero R]]
-
[[Category: Romero, R.]]
+
[[Category: Rutter M]]
-
[[Category: Rutter, M.]]
+
[[Category: Sauder JM]]
-
[[Category: Sauder, J M.]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transport protein]]
+
-
[[Category: Transporter]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 22 20:48:15 2009''
+

Current revision

Crystal structure of a periplasmic His/Glu/Gln/Arg/opine family-binding protein from Silicibacter pomeroyi in complex with lysine

PDB ID 3i6v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3i6v"
Personal tools