2zd2

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{{Seed}}
 
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[[Image:2zd2.png|left|200px]]
 
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==D202K mutant of P. denitrificans Atp12p==
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The line below this paragraph, containing "STRUCTURE_2zd2", creates the "Structure Box" on the page.
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<StructureSection load='2zd2' size='340' side='right'caption='[[2zd2]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2zd2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans_PD1222 Paracoccus denitrificans PD1222]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZD2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZD2 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zd2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zd2 OCA], [https://pdbe.org/2zd2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zd2 RCSB], [https://www.ebi.ac.uk/pdbsum/2zd2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zd2 ProSAT]</span></td></tr>
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{{STRUCTURE_2zd2| PDB=2zd2 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A1B060_PARDP A1B060_PARDP]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zd/2zd2_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zd2 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Mitochondrial F(1)-ATPase contains a hexamer of alternating alpha and beta subunits. The assembly of this structure requires two specialized chaperones, Atp11p and Atp12p, that bind transiently to beta and alpha. In the absence of Atp11p and Atp12p, the hexamer is not formed, and alpha and beta precipitate as large insoluble aggregates. An early model for the mechanism of chaperone-mediated F(1) assembly (Wang, Z. G., Sheluho, D., Gatti, D. L., and Ackerman, S. H. (2000) EMBO J. 19, 1486-1493) hypothesized that the chaperones themselves look very much like the alpha and beta subunits, and proposed an exchange of Atp11p for alpha and of Atp12p for beta; the driving force for the exchange was expected to be a higher affinity of alpha and beta for each other than for the respective chaperone partners. One important feature of this model was the prediction that as long as Atp11p is bound to beta and Atp12p is bound to alpha, the two F(1) subunits cannot interact at either the catalytic site or the noncatalytic site interface. Here we present the structures of Atp11p from Candida glabrata and Atp12p from Paracoccus denitrificans, and we show that some features of the Wang model are correct, namely that binding of the chaperones to alpha and beta prevents further interactions between these F(1) subunits. However, Atp11p and Atp12p do not resemble alpha or beta, and it is instead the F(1) gamma subunit that initiates the release of the chaperones from alpha and beta and their further assembly into the mature complex.
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===D202K mutant of P. denitrificans Atp12p===
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Chaperones of F1-ATPase.,Ludlam A, Brunzelle J, Pribyl T, Xu X, Gatti DL, Ackerman SH J Biol Chem. 2009 Jun 19;284(25):17138-46. Epub 2009 Apr 21. PMID:19383603<ref>PMID:19383603</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2zd2" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19383603}}, adds the Publication Abstract to the page
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*[[ATPase 3D structures|ATPase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19383603 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19383603}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2ZD2 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans_pd1222 Paracoccus denitrificans pd1222]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZD2 OCA].
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[[Category: Paracoccus denitrificans PD1222]]
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[[Category: Ackerman SH]]
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==Reference==
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[[Category: Brunzelle J]]
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<ref group="xtra">PMID:19383603</ref><references group="xtra"/>
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[[Category: Gatti DL]]
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[[Category: Paracoccus denitrificans pd1222]]
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[[Category: Ludlam A]]
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[[Category: Ackerman, S H.]]
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[[Category: Brunzelle, J.]]
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[[Category: Gatti, D L.]]
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[[Category: Ludlam, A.]]
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[[Category: Atpase chaperone f1 assembly]]
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[[Category: Chaperone]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 22 21:03:44 2009''
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Current revision

D202K mutant of P. denitrificans Atp12p

PDB ID 2zd2

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