1se7

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(New page: 200px<br /><applet load="1se7" size="450" color="white" frame="true" align="right" spinBox="true" caption="1se7" /> '''Solution structure of the E. coli bacterioph...)
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[[Image:1se7.jpg|left|200px]]<br /><applet load="1se7" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1se7" />
 
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'''Solution structure of the E. coli bacteriophage P1 encoded HOT protein: a homologue of the theta subunit of E. coli DNA polymerase III'''<br />
 
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==Overview==
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==Solution structure of the E. coli bacteriophage P1 encoded HOT protein: a homologue of the theta subunit of E. coli DNA polymerase III==
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DNA polymerase III, the main replicative polymerase of E. coli, contains a, small subunit, theta, that binds to the epsilon proofreading subunit and, appears to enhance the enzyme's proofreading function--especially under, extreme conditions. It was recently discovered that E. coli bacteriophage, P1 encodes a theta homolog, named HOT. The (1)H-(15)N HSQC spectrum of HOT, exhibits more uniform intensities and less evidence of conformational, exchange than that of theta; this uniformity facilitates a determination, of the HOT solution structure by NMR. The structure contains three alpha, helices, as reported previously for theta; however, the folding topology, of the two proteins is very different. Residual dipolar coupling, measurements on labeled theta support the conclusion that it is, structurally homologous with HOT. As judged by CD measurements, the, melting temperature of HOT was 62 degrees C, compared to 56 degrees C for, theta, consistent with other data suggesting greater thermal stability of, the HOT protein.
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<StructureSection load='1se7' size='340' side='right'caption='[[1se7]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1se7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_P1 Escherichia virus P1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SE7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SE7 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1se7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1se7 OCA], [https://pdbe.org/1se7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1se7 RCSB], [https://www.ebi.ac.uk/pdbsum/1se7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1se7 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q71T70_BPP1 Q71T70_BPP1]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/se/1se7_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1se7 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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DNA polymerase III, the main replicative polymerase of E. coli, contains a small subunit, theta, that binds to the epsilon proofreading subunit and appears to enhance the enzyme's proofreading function--especially under extreme conditions. It was recently discovered that E. coli bacteriophage P1 encodes a theta homolog, named HOT. The (1)H-(15)N HSQC spectrum of HOT exhibits more uniform intensities and less evidence of conformational exchange than that of theta; this uniformity facilitates a determination of the HOT solution structure by NMR. The structure contains three alpha helices, as reported previously for theta; however, the folding topology of the two proteins is very different. Residual dipolar coupling measurements on labeled theta support the conclusion that it is structurally homologous with HOT. As judged by CD measurements, the melting temperature of HOT was 62 degrees C, compared to 56 degrees C for theta, consistent with other data suggesting greater thermal stability of the HOT protein.
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==About this Structure==
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Phage like it HOT: solution structure of the bacteriophage P1-encoded HOT protein, a homolog of the theta subunit of E. coli DNA polymerase III.,Derose EF, Kirby TW, Mueller GA, Chikova AK, Schaaper RM, London RE Structure. 2004 Dec;12(12):2221-31. PMID:15576035<ref>PMID:15576035</ref>
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1SE7 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p21 Enterobacteria phage p21]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1SE7 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Phage like it HOT: solution structure of the bacteriophage P1-encoded HOT protein, a homolog of the theta subunit of E. coli DNA polymerase III., Derose EF, Kirby TW, Mueller GA, Chikova AK, Schaaper RM, London RE, Structure. 2004 Dec;12(12):2221-31. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15576035 15576035]
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</div>
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[[Category: Enterobacteria phage p21]]
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<div class="pdbe-citations 1se7" style="background-color:#fffaf0;"></div>
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[[Category: Protein complex]]
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== References ==
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[[Category: Chikova, A.K.]]
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<references/>
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[[Category: DeRose, E.F.]]
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__TOC__
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[[Category: Kirby, T.W.]]
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</StructureSection>
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[[Category: London, R.E.]]
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[[Category: Escherichia virus P1]]
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[[Category: Mueller, G.A.]]
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[[Category: Large Structures]]
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[[Category: Schaaper, R.M.]]
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[[Category: Chikova AK]]
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[[Category: e. coli bacteriophage p1]]
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[[Category: DeRose EF]]
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[[Category: e. coli dna polymerase iii]]
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[[Category: Kirby TW]]
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[[Category: homologue of theta]]
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[[Category: London RE]]
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[[Category: hot]]
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[[Category: Mueller GA]]
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[[Category: Schaaper RM]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 00:20:40 2007''
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Current revision

Solution structure of the E. coli bacteriophage P1 encoded HOT protein: a homologue of the theta subunit of E. coli DNA polymerase III

PDB ID 1se7

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