1jwi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1jwi" size="450" color="white" frame="true" align="right" spinBox="true" caption="1jwi, resolution 2.00&Aring;" /> '''Crystal Structure of...)
Current revision (07:28, 23 October 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1jwi.gif|left|200px]]<br /><applet load="1jwi" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1jwi, resolution 2.00&Aring;" />
 
-
'''Crystal Structure of Bitiscetin, a von Willeband Factor-dependent Platelet Aggregation Inducer.'''<br />
 
-
==Overview==
+
==Crystal Structure of Bitiscetin, a von Willeband Factor-dependent Platelet Aggregation Inducer.==
-
Bitiscetin, a C-type lectin-like protein isolated from the venom of the, snake Bitis arientans, promotes the interactions between plasma von, Willebrand factor (VWF) and platelet membrane glycoprotein Ib (GPIb) to, induce platelet aggregation. We report here the crystal structure of, bitiscetin at 2.0 A resolution. The overall fold is similar to those of, coagulation factor IX/X-binding protein (IX/X-bp) and flavocetin-A (a, GPIb-binding protein), although these three proteins are functionally, distinct from one another. The characteristic property determining target, recognition is explained mainly by the differences in the surface, potential on the central concave surface. A negatively charged patch on, the surface of bitiscetin is a candidate for the site of binding to the, positively charged surface of the VWF A1 domain, as shown in the case of, another platelet aggregation inducer, botrocetin. However, a positively, charged patch near the central concave surface is unique for bitiscetin, and suggests that it is the binding site for the negatively charged, surface of the VWF A3 domain. Thus, the interactions accounting for VWF, activation by bitiscetin possibly involve both the A1 and A3 domains of, VWF, indicating a specific mechanism of VWF activation by bitiscetin.
+
<StructureSection load='1jwi' size='340' side='right'caption='[[1jwi]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1jwi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bitis_arietans Bitis arietans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JWI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JWI FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jwi OCA], [https://pdbe.org/1jwi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jwi RCSB], [https://www.ebi.ac.uk/pdbsum/1jwi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jwi ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SLA_BITAR SLA_BITAR] Snaclec that binds to von Willebrand factor (VWF) and induces its interaction with GPIbalpha (GP1BA) (via the vWF A1 domain), resulting in platelet aggregation.<ref>PMID:12069583</ref> <ref>PMID:8806626</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jw/1jwi_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jwi ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Bitiscetin, a C-type lectin-like protein isolated from the venom of the snake Bitis arientans, promotes the interactions between plasma von Willebrand factor (VWF) and platelet membrane glycoprotein Ib (GPIb) to induce platelet aggregation. We report here the crystal structure of bitiscetin at 2.0 A resolution. The overall fold is similar to those of coagulation factor IX/X-binding protein (IX/X-bp) and flavocetin-A (a GPIb-binding protein), although these three proteins are functionally distinct from one another. The characteristic property determining target recognition is explained mainly by the differences in the surface potential on the central concave surface. A negatively charged patch on the surface of bitiscetin is a candidate for the site of binding to the positively charged surface of the VWF A1 domain, as shown in the case of another platelet aggregation inducer, botrocetin. However, a positively charged patch near the central concave surface is unique for bitiscetin and suggests that it is the binding site for the negatively charged surface of the VWF A3 domain. Thus, the interactions accounting for VWF activation by bitiscetin possibly involve both the A1 and A3 domains of VWF, indicating a specific mechanism of VWF activation by bitiscetin.
-
==About this Structure==
+
Crystal structure of bitiscetin, a von Willebrand factor-dependent platelet aggregation inducer.,Hirotsu S, Mizuno H, Fukuda K, Qi MC, Matsui T, Hamako J, Morita T, Titani K Biochemistry. 2001 Nov 13;40(45):13592-7. PMID:11695907<ref>PMID:11695907</ref>
-
1JWI is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Bitis_arientans Bitis arientans]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1JWI OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Crystal structure of bitiscetin, a von Willebrand factor-dependent platelet aggregation inducer., Hirotsu S, Mizuno H, Fukuda K, Qi MC, Matsui T, Hamako J, Morita T, Titani K, Biochemistry. 2001 Nov 13;40(45):13592-7. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11695907 11695907]
+
</div>
-
[[Category: Bitis arientans]]
+
<div class="pdbe-citations 1jwi" style="background-color:#fffaf0;"></div>
-
[[Category: Protein complex]]
+
== References ==
-
[[Category: Fukuda, K.]]
+
<references/>
-
[[Category: Hamako, J.]]
+
__TOC__
-
[[Category: Hirotsu, S.]]
+
</StructureSection>
-
[[Category: Matsui, T.]]
+
[[Category: Bitis arietans]]
-
[[Category: Mizuno, H.]]
+
[[Category: Large Structures]]
-
[[Category: Morita, T.]]
+
[[Category: Fukuda K]]
-
[[Category: Qi, M.C.]]
+
[[Category: Hamako J]]
-
[[Category: Titani, K.]]
+
[[Category: Hirotsu S]]
-
[[Category: c-type lectin]]
+
[[Category: Matsui T]]
-
[[Category: domain swapping]]
+
[[Category: Mizuno H]]
-
 
+
[[Category: Morita T]]
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 00:21:27 2007''
+
[[Category: Qi MC]]
 +
[[Category: Titani K]]

Current revision

Crystal Structure of Bitiscetin, a von Willeband Factor-dependent Platelet Aggregation Inducer.

PDB ID 1jwi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools