This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ife

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3ife", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (07:45, 6 September 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3ife.jpg|left|200px]]
 
-
<!--
+
==1.55 Angstrom Resolution Crystal Structure of Peptidase T (pepT-1) from Bacillus anthracis str. 'Ames Ancestor'.==
-
The line below this paragraph, containing "STRUCTURE_3ife", creates the "Structure Box" on the page.
+
<StructureSection load='3ife' size='340' side='right'caption='[[3ife]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ife]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_str._'Ames_Ancestor' Bacillus anthracis str. 'Ames Ancestor']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IFE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IFE FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_3ife| PDB=3ife | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ife FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ife OCA], [https://pdbe.org/3ife PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ife RCSB], [https://www.ebi.ac.uk/pdbsum/3ife PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ife ProSAT], [https://www.topsan.org/Proteins/CSGID/3ife TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PEPT_BACAN PEPT_BACAN] Cleaves the N-terminal amino acid of tripeptides (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/if/3ife_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ife ConSurf].
 +
<div style="clear:both"></div>
-
===1.55 Angstrom Resolution Crystal Structure of Peptidase T (pepT-1) from Bacillus anthracis str. 'Ames Ancestor'.===
+
==See Also==
-
 
+
*[[Peptidase T|Peptidase T]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3IFE is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IFE OCA].
+
[[Category: Bacillus anthracis str. 'Ames Ancestor']]
-
[[Category: Bacillus anthracis]]
+
[[Category: Large Structures]]
-
[[Category: Tripeptide aminopeptidase]]
+
[[Category: Anderson WF]]
-
[[Category: Anderson, W F.]]
+
[[Category: Dubrovska I]]
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
[[Category: Halavaty A]]
-
[[Category: Dubrovska, I.]]
+
[[Category: Minasov G]]
-
[[Category: Halavaty, A.]]
+
[[Category: Shuvalova L]]
-
[[Category: Minasov, G.]]
+
[[Category: Winsor J]]
-
[[Category: Shuvalova, L.]]
+
-
[[Category: Winsor, J.]]
+
-
[[Category: Aminopeptidase]]
+
-
[[Category: Center for structural genomics of infectious disease]]
+
-
[[Category: Csgid]]
+
-
[[Category: Cytoplasm]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Metallopeptidase]]
+
-
[[Category: Metalloprotease]]
+
-
[[Category: Pept-1]]
+
-
[[Category: Peptidase t]]
+
-
[[Category: Protease]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Zinc]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 5 11:08:26 2009''
+

Current revision

1.55 Angstrom Resolution Crystal Structure of Peptidase T (pepT-1) from Bacillus anthracis str. 'Ames Ancestor'.

PDB ID 3ife

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ife"
Personal tools