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3igo

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{{Seed}}
 
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[[Image:3igo.jpg|left|200px]]
 
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==Crystal structure of Cryptosporidium parvum CDPK1, cgd3_920==
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The line below this paragraph, containing "STRUCTURE_3igo", creates the "Structure Box" on the page.
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<StructureSection load='3igo' size='340' side='right'caption='[[3igo]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3igo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cryptosporidium_parvum_Iowa_II Cryptosporidium parvum Iowa II]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IGO FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SRT:S,R+MESO-TARTARIC+ACID'>SRT</scene></td></tr>
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{{STRUCTURE_3igo| PDB=3igo | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3igo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3igo OCA], [https://pdbe.org/3igo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3igo RCSB], [https://www.ebi.ac.uk/pdbsum/3igo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3igo ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A3FQ16_CRYPI A3FQ16_CRYPI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ig/3igo_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3igo ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Calcium-dependent protein kinases (CDPKs) have pivotal roles in the calcium-signaling pathway in plants, ciliates and apicomplexan parasites and comprise a calmodulin-dependent kinase (CaMK)-like kinase domain regulated by a calcium-binding domain in the C terminus. To understand this intramolecular mechanism of activation, we solved the structures of the autoinhibited (apo) and activated (calcium-bound) conformations of CDPKs from the apicomplexan parasites Toxoplasma gondii and Cryptosporidium parvum. In the apo form, the C-terminal CDPK activation domain (CAD) resembles a calmodulin protein with an unexpected long helix in the N terminus that inhibits the kinase domain in the same manner as CaMKII. Calcium binding triggers the reorganization of the CAD into a highly intricate fold, leading to its relocation around the base of the kinase domain to a site remote from the substrate binding site. This large conformational change constitutes a distinct mechanism in calcium signal-transduction pathways.
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===Crystal structure of Cryptosporidium parvum CDPK1, cgd3_920===
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Structures of apicomplexan calcium-dependent protein kinases reveal mechanism of activation by calcium.,Wernimont AK, Artz JD, Finerty P Jr, Lin YH, Amani M, Allali-Hassani A, Senisterra G, Vedadi M, Tempel W, Mackenzie F, Chau I, Lourido S, Sibley LD, Hui R Nat Struct Mol Biol. 2010 May;17(5):596-601. Epub 2010 May 2. PMID:20436473<ref>PMID:20436473</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3igo" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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3IGO is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Cryptosporidium_parvum_iowa_ii Cryptosporidium parvum iowa ii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGO OCA].
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*[[Calcium-dependent protein kinase|Calcium-dependent protein kinase]]
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[[Category: Cryptosporidium parvum iowa ii]]
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== References ==
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[[Category: Allali-Hassanali, A.]]
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<references/>
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[[Category: Amani, M.]]
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__TOC__
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[[Category: Arrowsmith, C H.]]
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</StructureSection>
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[[Category: Artz, J D.]]
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[[Category: Cryptosporidium parvum Iowa II]]
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[[Category: Bochkarev, A.]]
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[[Category: Large Structures]]
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[[Category: Bountra, C.]]
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[[Category: Allali-Hassanali A]]
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[[Category: Edwards, A M.]]
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[[Category: Amani M]]
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[[Category: Finnerty, P.]]
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[[Category: Arrowsmith CH]]
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[[Category: Hui, R.]]
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[[Category: Artz JD]]
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[[Category: Lin, Y H.]]
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[[Category: Bochkarev A]]
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[[Category: MacKenzie, F.]]
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[[Category: Bountra C]]
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[[Category: SGC, Structural Genomics Consortium.]]
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[[Category: Edwards AM]]
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[[Category: Tempel, W.]]
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[[Category: Finnerty P]]
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[[Category: Vedadi, M.]]
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[[Category: Hui R]]
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[[Category: Weigelt, J.]]
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[[Category: Lin YH]]
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[[Category: Wernimont, A K.]]
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[[Category: MacKenzie F]]
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[[Category: Atp-binding]]
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[[Category: Tempel W]]
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[[Category: Calcium]]
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[[Category: Vedadi M]]
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[[Category: Cdpk]]
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[[Category: Weigelt J]]
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[[Category: Kinase]]
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[[Category: Wernimont AK]]
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[[Category: Nucleotide-binding]]
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[[Category: Parasite]]
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[[Category: Serine/threonine-protein kinase]]
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[[Category: Sgc]]
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[[Category: Structural genomic]]
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[[Category: Structural genomics consortium]]
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[[Category: Transferase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 12 13:47:47 2009''
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Current revision

Crystal structure of Cryptosporidium parvum CDPK1, cgd3_920

PDB ID 3igo

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