This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3imf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3imf", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (07:53, 6 September 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3imf.jpg|left|200px]]
 
-
<!--
+
==1.99 Angstrom resolution crystal structure of a short chain dehydrogenase from Bacillus anthracis str. 'Ames Ancestor'==
-
The line below this paragraph, containing "STRUCTURE_3imf", creates the "Structure Box" on the page.
+
<StructureSection load='3imf' size='340' side='right'caption='[[3imf]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3imf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_str._'Ames_Ancestor' Bacillus anthracis str. 'Ames Ancestor']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IMF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IMF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3imf| PDB=3imf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3imf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3imf OCA], [https://pdbe.org/3imf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3imf RCSB], [https://www.ebi.ac.uk/pdbsum/3imf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3imf ProSAT], [https://www.topsan.org/Proteins/CSGID/3imf TOPSAN]</span></td></tr>
-
 
+
</table>
-
===1.99 Angstrom resolution crystal structure of a short chain dehydrogenase from Bacillus anthracis str. 'Ames Ancestor'===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/A0A6L8NTZ6_BACAN A0A6L8NTZ6_BACAN]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3IMF is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IMF OCA].
+
Check<jmol>
-
[[Category: Bacteria]]
+
<jmolCheckbox>
-
[[Category: Anderson, W F.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/im/3imf_consurf.spt"</scriptWhenChecked>
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Gordon, E.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Halavaty, A S.]]
+
</jmolCheckbox>
-
[[Category: Minasov, G.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3imf ConSurf].
-
[[Category: Onopriyenko, O.]]
+
<div style="clear:both"></div>
-
[[Category: Peterson, S.]]
+
__TOC__
-
[[Category: Savchenko, A.]]
+
</StructureSection>
-
[[Category: Skarina, T.]]
+
[[Category: Bacillus anthracis str. 'Ames Ancestor']]
-
[[Category: Center for structural genomics of infectious disease]]
+
[[Category: Large Structures]]
-
[[Category: Csgid]]
+
[[Category: Anderson WF]]
-
[[Category: Infectious disease]]
+
[[Category: Gordon E]]
-
[[Category: Oxidoreductase]]
+
[[Category: Halavaty AS]]
-
[[Category: Short chain dehydrogenase]]
+
[[Category: Minasov G]]
-
[[Category: Structural genomic]]
+
[[Category: Onopriyenko O]]
-
 
+
[[Category: Peterson S]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 19 13:47:30 2009''
+
[[Category: Savchenko A]]
 +
[[Category: Skarina T]]

Current revision

1.99 Angstrom resolution crystal structure of a short chain dehydrogenase from Bacillus anthracis str. 'Ames Ancestor'

PDB ID 3imf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3imf"
Personal tools