This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3imi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3imi", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (03:36, 21 April 2022) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3imi.jpg|left|200px]]
 
-
<!--
+
==2.01 Angstrom resolution crystal structure of a HIT family protein from Bacillus anthracis str. 'Ames Ancestor'==
-
The line below this paragraph, containing "STRUCTURE_3imi", creates the "Structure Box" on the page.
+
<StructureSection load='3imi' size='340' side='right'caption='[[3imi]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3imi]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_ames_"ancestor" Bacillus anthracis ames "ancestor"]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IMI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IMI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3imi| PDB=3imi | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAS0978, BA_1047, GBAA1047, GBAA_1047, YP_017672 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=261594 Bacillus anthracis Ames "Ancestor"])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3imi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3imi OCA], [https://pdbe.org/3imi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3imi RCSB], [https://www.ebi.ac.uk/pdbsum/3imi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3imi ProSAT], [https://www.topsan.org/Proteins/CSGID/3imi TOPSAN]</span></td></tr>
-
===2.01 Angstrom resolution crystal structure of a HIT family protein from Bacillus anthracis str. 'Ames Ancestor'===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3IMI is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IMI OCA].
+
<jmolCheckbox>
-
[[Category: Bacteria]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/im/3imi_consurf.spt"</scriptWhenChecked>
-
[[Category: Anderson, W F.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Gordon, E.]]
+
</jmolCheckbox>
-
[[Category: Halavaty, A S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3imi ConSurf].
-
[[Category: Onopriyenko, O.]]
+
<div style="clear:both"></div>
-
[[Category: Papazisi, L.]]
+
__TOC__
-
[[Category: Savchenko, A.]]
+
</StructureSection>
-
[[Category: Skarina, T.]]
+
[[Category: Bacillus anthracis ames ancestor]]
-
[[Category: Wawrzak, Z.]]
+
[[Category: Large Structures]]
-
[[Category: Center for structural genomics of infectious disease]]
+
[[Category: Anderson, W F]]
 +
[[Category: Structural genomic]]
 +
[[Category: Gordon, E]]
 +
[[Category: Halavaty, A S]]
 +
[[Category: Onopriyenko, O]]
 +
[[Category: Papazisi, L]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Skarina, T]]
 +
[[Category: Wawrzak, Z]]
[[Category: Csgid]]
[[Category: Csgid]]
[[Category: Hit family protein]]
[[Category: Hit family protein]]
[[Category: Infectious disease]]
[[Category: Infectious disease]]
-
[[Category: Structural genomic]]
 
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 19 13:47:57 2009''
 

Current revision

2.01 Angstrom resolution crystal structure of a HIT family protein from Bacillus anthracis str. 'Ames Ancestor'

PDB ID 3imi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools