3f6w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:51, 6 November 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3f6w.png|left|200px]]
 
-
<!--
+
==XRE-family like protein from Pseudomonas syringae pv. tomato str. DC3000==
-
The line below this paragraph, containing "STRUCTURE_3f6w", creates the "Structure Box" on the page.
+
<StructureSection load='3f6w' size='340' side='right'caption='[[3f6w]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3f6w]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._DC3000 Pseudomonas syringae pv. tomato str. DC3000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F6W FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3f6w| PDB=3f6w | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f6w OCA], [https://pdbe.org/3f6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f6w RCSB], [https://www.ebi.ac.uk/pdbsum/3f6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f6w ProSAT], [https://www.topsan.org/Proteins/MCSG/3f6w TOPSAN]</span></td></tr>
-
 
+
</table>
-
===XRE-family like protein from Pseudomonas syringae pv. tomato str. DC3000===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q889N2_PSESM Q889N2_PSESM]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3F6W is a 5 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._dc3000 Pseudomonas syringae pv. tomato str. dc3000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F6W OCA].
+
Check<jmol>
-
[[Category: Pseudomonas syringae pv. tomato str. dc3000]]
+
<jmolCheckbox>
-
[[Category: Cuff, M.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f6/3f6w_consurf.spt"</scriptWhenChecked>
-
[[Category: Gu, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Joachimiak, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Petrova, T.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3f6w ConSurf].
-
[[Category: Shackleford, G.]]
+
<div style="clear:both"></div>
-
[[Category: Dna binding protein]]
+
__TOC__
-
[[Category: Dna-binding]]
+
</StructureSection>
-
[[Category: Helix-turn-helix]]
+
[[Category: Large Structures]]
-
[[Category: Mcsg]]
+
[[Category: Pseudomonas syringae pv. tomato str. DC3000]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: Cuff M]]
-
[[Category: Protein structure initiative]]
+
[[Category: Gu M]]
-
[[Category: Psi-2]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Petrova T]]
-
[[Category: Xenobiotic response element family of transcriptional regulator]]
+
[[Category: Shackleford G]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 19 13:55:46 2009''
+

Current revision

XRE-family like protein from Pseudomonas syringae pv. tomato str. DC3000

PDB ID 3f6w

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3f6w"
Personal tools