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3i8n

From Proteopedia

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{{Seed}}
 
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[[Image:3i8n.jpg|left|200px]]
 
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==A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.==
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The line below this paragraph, containing "STRUCTURE_3i8n", creates the "Structure Box" on the page.
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<StructureSection load='3i8n' size='340' side='right'caption='[[3i8n]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3i8n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I8N FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
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-->
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_3i8n| PDB=3i8n | SCENE= }}
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Vibrio parahaemolyticus, VP2912 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i8n OCA], [https://pdbe.org/3i8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i8n RCSB], [https://www.ebi.ac.uk/pdbsum/3i8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i8n ProSAT]</span></td></tr>
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===A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.===
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==About this Structure==
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Check<jmol>
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3I8N is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I8N OCA].
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<jmolCheckbox>
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[[Category: Vibrio parahaemolyticus]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i8/3i8n_consurf.spt"</scriptWhenChecked>
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[[Category: Bearden, J.]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Joachimiak, A.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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</jmolCheckbox>
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[[Category: Tan, K.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i8n ConSurf].
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[[Category: Tesar, C.]]
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Bearden, J]]
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[[Category: Joachimiak, A]]
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[[Category: Structural genomic]]
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[[Category: Tan, K]]
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[[Category: Tesar, C]]
[[Category: Apc64273 1]]
[[Category: Apc64273 1]]
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[[Category: Mcsg.]]
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[[Category: Mcsg]]
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[[Category: Midwest center for structural genomic]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Protein structure initiative]]
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[[Category: Psi-2]]
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[[Category: Structural genomic]]
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[[Category: Unknown function]]
[[Category: Unknown function]]
[[Category: Vibrio parahaemolyticus rimd 2210633]]
[[Category: Vibrio parahaemolyticus rimd 2210633]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Sep 3 16:15:08 2009''
 

Current revision

A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.

PDB ID 3i8n

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