This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1spx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1spx" size="450" color="white" frame="true" align="right" spinBox="true" caption="1spx, resolution 2.10&Aring;" /> '''Crystal Structure of...)
Current revision (06:19, 23 August 2023) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1spx.gif|left|200px]]<br /><applet load="1spx" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1spx, resolution 2.10&Aring;" />
 
-
'''Crystal Structure of Glucose Dehydrogenase of Caenorhabditis Elegans in the Apo-Form'''<br />
 
-
==About this Structure==
+
==Crystal Structure of Glucose Dehydrogenase of Caenorhabditis Elegans in the Apo-Form==
-
1SPX is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Active as [http://en.wikipedia.org/wiki/Glucose_1-dehydrogenase Glucose 1-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.47 1.1.1.47] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1SPX OCA].
+
<StructureSection load='1spx' size='340' side='right'caption='[[1spx]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1spx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SPX FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1spx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1spx OCA], [https://pdbe.org/1spx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1spx RCSB], [https://www.ebi.ac.uk/pdbsum/1spx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1spx ProSAT], [https://www.topsan.org/Proteins/SECSG/1spx TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q18946_CAEEL Q18946_CAEEL]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sp/1spx_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1spx ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Caenorhabditis elegans]]
[[Category: Caenorhabditis elegans]]
-
[[Category: Glucose 1-dehydrogenase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Arabashi A]]
-
[[Category: Arabashi, A.]]
+
[[Category: Bray T]]
-
[[Category: Bray, T.]]
+
[[Category: Bunzel B]]
-
[[Category: Bunzel, B.]]
+
[[Category: Carson M]]
-
[[Category: Carson, M.]]
+
[[Category: Gray R]]
-
[[Category: Gray, R.]]
+
[[Category: Huang W-Y]]
-
[[Category: Huang, W.Y.]]
+
[[Category: Li S]]
-
[[Category: Li, S.]]
+
[[Category: Lin G]]
-
[[Category: Lin, G.]]
+
[[Category: Lu S]]
-
[[Category: Lu, S.]]
+
[[Category: Luan C-H]]
-
[[Category: Luan, C.H.]]
+
[[Category: Luo D]]
-
[[Category: Luo, D.]]
+
[[Category: Luo M]]
-
[[Category: Luo, M.]]
+
[[Category: McCombs D]]
-
[[Category: McCombs, D.]]
+
[[Category: Nagy L]]
-
[[Category: Nagy, L.]]
+
[[Category: Qiu S]]
-
[[Category: Qiu, S.]]
+
[[Category: Schormann N]]
-
[[Category: SECSG, Southeast.Collaboratory.for.Structural.Genomics.]]
+
[[Category: Symersky J]]
-
[[Category: Schormann, N.]]
+
[[Category: Tsao J]]
-
[[Category: Symersky, J.]]
+
[[Category: Zhang Y]]
-
[[Category: Tsao, J.]]
+
[[Category: Zhou J]]
-
[[Category: Zhang, Y.]]
+
-
[[Category: Zhou, J.]]
+
-
[[Category: parallel beta-sheet of seven strands in the order 3214567; three alpha-helices on either side of beta-sheet; seventh alpha-helix on top of beta-sheet]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: secsg]]
+
-
[[Category: southeast collaboratory for structural genomics]]
+
-
[[Category: structural genomics]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 00:58:11 2007''
+

Current revision

Crystal Structure of Glucose Dehydrogenase of Caenorhabditis Elegans in the Apo-Form

PDB ID 1spx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools