3h1r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (22:36, 26 March 2025) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3h1r.jpg|left|200px]]
 
-
<!--
+
==Order-disorder structure of fluorescent protein FP480==
-
The line below this paragraph, containing "STRUCTURE_3h1r", creates the "Structure Box" on the page.
+
<StructureSection load='3h1r' size='340' side='right'caption='[[3h1r]], [[Resolution|resolution]] 2.41&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3h1r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Entacmaea_quadricolor Entacmaea quadricolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H1R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H1R FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.41&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NRQ:{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>NRQ</scene></td></tr>
-
{{STRUCTURE_3h1r| PDB=3h1r | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h1r OCA], [https://pdbe.org/3h1r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h1r RCSB], [https://www.ebi.ac.uk/pdbsum/3h1r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h1r ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/D0VX33_ENTQU D0VX33_ENTQU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h1/3h1r_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h1r ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
In the last decade, advances in instrumentation and software development have made crystallography a powerful tool in structural biology. Using this method, structural information can now be acquired from pathological crystals that would have been abandoned in earlier times. In this paper, the order-disorder (OD) structure of fluorescent protein FP480 is discussed. The structure is composed of tetramers with 222 symmetry incorporated into the lattice in two different ways, namely rotated 90 degrees with respect to each other around the crystal c axis, with tetramer axes coincident with crystallographic twofold axes. The random distribution of alternatively oriented tetramers in the crystal creates a rotational OD structure with statistically averaged I422 symmetry, although the presence of very weak and diffuse additional reflections suggests that the randomness is only approximate.
-
===Order-disorder structure of fluorescent protein FP480===
+
Rotational order-disorder structure of fluorescent protein FP480.,Pletnev S, Morozova KS, Verkhusha VV, Dauter Z Acta Crystallogr D Biol Crystallogr. 2009 Sep;65(Pt 9):906-12. Epub 2009, Aug 6. PMID:19690368<ref>PMID:19690368</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_19690368}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 3h1r" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 19690368 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_19690368}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
3H1R is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Entacmaea_quadricolor Entacmaea quadricolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H1R OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:19690368</ref><references group="xtra"/>
+
[[Category: Entacmaea quadricolor]]
[[Category: Entacmaea quadricolor]]
-
[[Category: Dauter, Z.]]
+
[[Category: Large Structures]]
-
[[Category: Morozova, K S.]]
+
[[Category: Dauter Z]]
-
[[Category: Pletnev, S.]]
+
[[Category: Morozova KS]]
-
[[Category: Verkhusha, V V.]]
+
[[Category: Pletnev S]]
-
[[Category: Fluorescent protein]]
+
[[Category: Verkhusha VV]]
-
[[Category: Od-structure]]
+
-
[[Category: Order-disorder structure]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 9 09:31:05 2009''
+

Current revision

Order-disorder structure of fluorescent protein FP480

PDB ID 3h1r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3h1r"
Personal tools