We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

1x1e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1x1e" size="450" color="white" frame="true" align="right" spinBox="true" caption="1x1e, resolution 1.76&Aring;" /> '''Crystal Structure of...)
Current revision (08:04, 25 October 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1x1e.gif|left|200px]]<br /><applet load="1x1e" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1x1e, resolution 1.76&Aring;" />
 
-
'''Crystal Structure of TT0495 protein from Thermus thermophilus HB8'''<br />
 
-
==About this Structure==
+
==Crystal Structure of TT0495 protein from Thermus thermophilus HB8==
-
1X1E is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Active as [http://en.wikipedia.org/wiki/2-deoxy-D-gluconate_3-dehydrogenase 2-deoxy-D-gluconate 3-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.125 1.1.1.125] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1X1E OCA].
+
<StructureSection load='1x1e' size='340' side='right'caption='[[1x1e]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
-
[[Category: 2-deoxy-D-gluconate 3-dehydrogenase]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1x1e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X1E FirstGlance]. <br>
-
[[Category: Thermus thermophilus]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.76&#8491;</td></tr>
-
[[Category: Kunishima, N.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1e OCA], [https://pdbe.org/1x1e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x1e RCSB], [https://www.ebi.ac.uk/pdbsum/1x1e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x1e ProSAT], [https://www.topsan.org/Proteins/RSGI/1x1e TOPSAN]</span></td></tr>
-
[[Category: Lokanath, N.K.]]
+
</table>
-
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+
== Function ==
-
[[Category: Terao, Y.]]
+
[https://www.uniprot.org/uniprot/Q53W82_THET8 Q53W82_THET8]
-
[[Category: dehydrogenase]]
+
== Evolutionary Conservation ==
-
[[Category: national project on protein structural and functional analyses]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: nppsfa]]
+
Check<jmol>
-
[[Category: riken structural genomics/proteomics initiative]]
+
<jmolCheckbox>
-
[[Category: rsgi]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x1/1x1e_consurf.spt"</scriptWhenChecked>
-
[[Category: structural genomics]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 01:14:47 2007''
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x1e ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermus thermophilus HB8]]
 +
[[Category: Kunishima N]]
 +
[[Category: Lokanath NK]]
 +
[[Category: Terao Y]]

Current revision

Crystal Structure of TT0495 protein from Thermus thermophilus HB8

PDB ID 1x1e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools