3ghz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:06, 6 September 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3ghz.png|left|200px]]
 
-
<!--
+
==2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Salmonella typhimurium==
-
The line below this paragraph, containing "STRUCTURE_3ghz", creates the "Structure Box" on the page.
+
<StructureSection load='3ghz' size='340' side='right'caption='[[3ghz]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ghz]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GHZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
-
{{STRUCTURE_3ghz| PDB=3ghz | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ghz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ghz OCA], [https://pdbe.org/3ghz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ghz RCSB], [https://www.ebi.ac.uk/pdbsum/3ghz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ghz ProSAT], [https://www.topsan.org/Proteins/CSGID/3ghz TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ISPF_SALTY ISPF_SALTY] Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (By similarity).[HAMAP-Rule:MF_00107]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gh/3ghz_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ghz ConSurf].
 +
<div style="clear:both"></div>
-
===2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Salmonella typhimurium===
+
==See Also==
-
 
+
*[[MECDP synthase 3D structures|MECDP synthase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3GHZ is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GHZ OCA].
+
[[Category: Large Structures]]
-
[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-
[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
+
[[Category: Anderson WF]]
-
[[Category: Anderson, W F.]]
+
[[Category: Gu M]]
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
[[Category: Joachimiak A]]
-
[[Category: Gu, M.]]
+
[[Category: Osipiuk J]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Peterson S]]
-
[[Category: Osipiuk, J.]]
+
-
[[Category: Peterson, J.]]
+
-
[[Category: 2-c-methyl-d-erythritol 2]]
+
-
[[Category: 4-cyclodiphosphate synthase]]
+
-
[[Category: Center for structural genomics of infectious disease]]
+
-
[[Category: Csgid]]
+
-
[[Category: Idp01038]]
+
-
[[Category: Isoprene biosynthesis]]
+
-
[[Category: Lyase]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 16 20:05:45 2009''
+

Current revision

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Salmonella typhimurium

PDB ID 3ghz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ghz"
Personal tools