1cgm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:40, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1cgm.png|left|200px]]
 
-
<!--
+
==STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES==
-
The line below this paragraph, containing "STRUCTURE_1cgm", creates the "Structure Box" on the page.
+
<StructureSection load='1cgm' size='340' side='right'caption='[[1cgm]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cucumber_green_mottle_mosaic_virus Cucumber green mottle mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CGM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Fiber diffraction, [[Resolution|Resolution]] 3.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
-
{{STRUCTURE_1cgm| PDB=1cgm | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [https://pdbe.org/1cgm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [https://www.ebi.ac.uk/pdbsum/1cgm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cgm ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CAPSD_CGMVW CAPSD_CGMVW] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cg/1cgm_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cgm ConSurf].
 +
<div style="clear:both"></div>
-
===STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES===
+
==See Also==
-
 
+
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_8201619}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 8201619 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_8201619}}
+
-
 
+
-
==About this Structure==
+
-
1CGM is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Cucumber_green_mottle_mosaic_virus Cucumber green mottle mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:8201619</ref><references group="xtra"/>
+
[[Category: Cucumber green mottle mosaic virus]]
[[Category: Cucumber green mottle mosaic virus]]
-
[[Category: Stubbs, G.]]
+
[[Category: Large Structures]]
-
[[Category: Wang, H.]]
+
[[Category: Stubbs G]]
-
[[Category: Helical virus]]
+
[[Category: Wang H]]
-
[[Category: Virus]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 21 19:33:26 2009''
+

Current revision

STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES

PDB ID 1cgm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1cgm"
Personal tools