This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2zjt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:57, 13 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2zjt.png|left|200px]]
 
-
<!--
+
==Crystal structure of dna gyrase B' domain sheds lights on the mechanism for T-segment navigation==
-
The line below this paragraph, containing "STRUCTURE_2zjt", creates the "Structure Box" on the page.
+
<StructureSection load='2zjt' size='340' side='right'caption='[[2zjt]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2zjt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZJT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZJT FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zjt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zjt OCA], [https://pdbe.org/2zjt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zjt RCSB], [https://www.ebi.ac.uk/pdbsum/2zjt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zjt ProSAT]</span></td></tr>
-
{{STRUCTURE_2zjt| PDB=2zjt | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GYRB_MYCTU GYRB_MYCTU] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zj/2zjt_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zjt ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of dna gyrase B' domain sheds lights on the mechanism for T-segment navigation===
+
==See Also==
-
 
+
*[[Gyrase 3D Structures|Gyrase 3D Structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_19596812}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 19596812 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_19596812}}
+
-
 
+
-
==About this Structure==
+
-
2ZJT is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZJT OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:19596812</ref><references group="xtra"/>
+
[[Category: Mycobacterium tuberculosis]]
[[Category: Mycobacterium tuberculosis]]
-
[[Category: Fu, G S.]]
+
[[Category: Fu GS]]
-
[[Category: Hu, Y L.]]
+
[[Category: Hu YL]]
-
[[Category: Wang, D C.]]
+
[[Category: Wang DC]]
-
[[Category: Zhu, D Y.]]
+
[[Category: Zhu DY]]
-
[[Category: Atp-binding]]
+
-
[[Category: Dna gyrase]]
+
-
[[Category: Dna topoisomerase ii]]
+
-
[[Category: G-segment]]
+
-
[[Category: Gyrb-ctd]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: T-segment]]
+
-
[[Category: Tail]]
+
-
[[Category: Toprim]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 23 08:21:11 2009''
+

Current revision

Crystal structure of dna gyrase B' domain sheds lights on the mechanism for T-segment navigation

PDB ID 2zjt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2zjt"
Personal tools