1x8j

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(New page: 200px<br /><applet load="1x8j" size="450" color="white" frame="true" align="right" spinBox="true" caption="1x8j, resolution 2.35&Aring;" /> '''Crystal structure of...)
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[[Image:1x8j.gif|left|200px]]<br /><applet load="1x8j" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1x8j, resolution 2.35&Aring;" />
 
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'''Crystal structure of retinol dehydratase in complex with androsterone and inactive cofactor PAP'''<br />
 
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==Overview==
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==Crystal structure of retinol dehydratase in complex with androsterone and inactive cofactor PAP==
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The structure of retinol dehydratase (DHR) from Spodoptera frugiperda, a, member of the sulfotransferase superfamily, in complexes with the inactive, form of the cofactor PAP 3'-phosphoadenosine 5'-phosphate (PAP) and (1), the product of the reaction with retinol anhydroretinol (AR), (2) the, retinoid inhibitor all-trans-4-oxoretinol (OR), and (3) the potent steroid, inhibitor androsterone (AND) have been determined and compared to the, enzyme complex with PAP and retinol. The structures show that the geometry, of the active-site amino acids is largely preserved in the various, complexes. However, the beta-ionone rings of the retinoids are oriented, differently with respect to side chains that have been shown to be, important for the enzymatic reaction. In addition, the DHR:PAP:AND complex, reveals a novel mode for steroid binding that contrasts significantly with, that for steroid binding in other sulfotransferases. The molecule is, displaced and rotated approximately 180 degrees along its length so that, there is no acceptor hydroxyl in close proximity to the site of sulfate, transfer. This observation explains why steroids are potent inhibitors of, retinol dehydratase activity, rather than substrates for sulfonation. Most, of the steroid-protein contacts are provided by the alpha-helical cap that, distinguishes this member of the superfamily. This observation suggests, that in addition to providing a chemical environment that promotes the, dehydration of a sulfonated intermediate, the cap may also serve to, minimize a promiscuous sulfotransferases activity.
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<StructureSection load='1x8j' size='340' side='right'caption='[[1x8j]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1x8j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X8J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X8J FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=AOI:ANDROSTERONE'>AOI</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x8j OCA], [https://pdbe.org/1x8j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x8j RCSB], [https://www.ebi.ac.uk/pdbsum/1x8j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x8j ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q26490_SPOFR Q26490_SPOFR]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x8/1x8j_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x8j ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The structure of retinol dehydratase (DHR) from Spodoptera frugiperda, a member of the sulfotransferase superfamily, in complexes with the inactive form of the cofactor PAP 3'-phosphoadenosine 5'-phosphate (PAP) and (1) the product of the reaction with retinol anhydroretinol (AR), (2) the retinoid inhibitor all-trans-4-oxoretinol (OR), and (3) the potent steroid inhibitor androsterone (AND) have been determined and compared to the enzyme complex with PAP and retinol. The structures show that the geometry of the active-site amino acids is largely preserved in the various complexes. However, the beta-ionone rings of the retinoids are oriented differently with respect to side chains that have been shown to be important for the enzymatic reaction. In addition, the DHR:PAP:AND complex reveals a novel mode for steroid binding that contrasts significantly with that for steroid binding in other sulfotransferases. The molecule is displaced and rotated approximately 180 degrees along its length so that there is no acceptor hydroxyl in close proximity to the site of sulfate transfer. This observation explains why steroids are potent inhibitors of retinol dehydratase activity, rather than substrates for sulfonation. Most of the steroid-protein contacts are provided by the alpha-helical cap that distinguishes this member of the superfamily. This observation suggests that in addition to providing a chemical environment that promotes the dehydration of a sulfonated intermediate, the cap may also serve to minimize a promiscuous sulfotransferases activity.
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==About this Structure==
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The structures of the unique sulfotransferase retinol dehydratase with product and inhibitors provide insight into enzyme mechanism and inhibition.,Pakhomova S, Buck J, Newcomer ME Protein Sci. 2005 Jan;14(1):176-82. Epub 2004 Dec 2. PMID:15608121<ref>PMID:15608121</ref>
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1X8J is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda] with CA, A3P and AE2 as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1X8J OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The structures of the unique sulfotransferase retinol dehydratase with product and inhibitors provide insight into enzyme mechanism and inhibition., Pakhomova S, Buck J, Newcomer ME, Protein Sci. 2005 Jan;14(1):176-82. Epub 2004 Dec 2. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15608121 15608121]
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</div>
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[[Category: Single protein]]
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<div class="pdbe-citations 1x8j" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Spodoptera frugiperda]]
[[Category: Spodoptera frugiperda]]
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[[Category: Buck, J.]]
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[[Category: Buck J]]
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[[Category: Newcomer, M.E.]]
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[[Category: Newcomer ME]]
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[[Category: Pakhomova, S.]]
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[[Category: Pakhomova S]]
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[[Category: A3P]]
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[[Category: AE2]]
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[[Category: CA]]
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[[Category: dehydratase]]
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[[Category: steroid binding.]]
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[[Category: sulfotransferase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 01:37:36 2007''
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Current revision

Crystal structure of retinol dehydratase in complex with androsterone and inactive cofactor PAP

PDB ID 1x8j

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