1t6c
From Proteopedia
(New page: 200px<br /><applet load="1t6c" size="450" color="white" frame="true" align="right" spinBox="true" caption="1t6c, resolution 1.53Å" /> '''Structural character...) |
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| - | [[Image:1t6c.jpg|left|200px]]<br /><applet load="1t6c" size=" | + | [[Image:1t6c.jpg|left|200px]]<br /><applet load="1t6c" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1t6c, resolution 1.53Å" /> | caption="1t6c, resolution 1.53Å" /> | ||
'''Structural characterization of the Ppx/GppA protein family: crystal structure of the Aquifex aeolicus family member'''<br /> | '''Structural characterization of the Ppx/GppA protein family: crystal structure of the Aquifex aeolicus family member'''<br /> | ||
==Overview== | ==Overview== | ||
| - | Exopolyphosphatase/guanosine pentaphosphate phosphohydrolase (PPX/GPPA) | + | Exopolyphosphatase/guanosine pentaphosphate phosphohydrolase (PPX/GPPA) enzymes play central roles in the bacterial stringent response induced by starvation. The high-resolution crystal structure of the putative Aquifex aeolicus PPX/GPPA phosphatase from the actin-like ATPase domain superfamily has been determined, providing the first insights to features of the common catalytic core of the PPX/GPPA family. The protein has a two-domain structure with an active site located in the interdomain cleft. Two crystal forms were investigated (type I and II) at resolutions of 1.53 and 2.15 A, respectively. This revealed a structural flexibility that has previously been described as a "butterfly-like" cleft opening around the active site in other actin-like superfamily proteins. A calcium ion is observed at the center of this region in type I crystals, substantiating that PPX/GPPA enzymes use metal ions for catalysis. Structural analysis suggests that nucleotides bind at a similar position to that seen in other members of the superfamily. |
==About this Structure== | ==About this Structure== | ||
| - | 1T6C is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus_vf5 Aquifex aeolicus vf5] with IOD, CA, CL and MPD as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http:// | + | 1T6C is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus_vf5 Aquifex aeolicus vf5] with <scene name='pdbligand=IOD:'>IOD</scene>, <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=MPD:'>MPD</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6C OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Gajhede, M.]] | [[Category: Gajhede, M.]] | ||
| - | [[Category: Kastrup, J | + | [[Category: Kastrup, J S.]] |
[[Category: Kristensen, O.]] | [[Category: Kristensen, O.]] | ||
[[Category: Laurberg, M.]] | [[Category: Laurberg, M.]] | ||
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[[Category: alpha/beta protein]] | [[Category: alpha/beta protein]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:10:23 2008'' |
Revision as of 13:10, 21 February 2008
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Structural characterization of the Ppx/GppA protein family: crystal structure of the Aquifex aeolicus family member
Overview
Exopolyphosphatase/guanosine pentaphosphate phosphohydrolase (PPX/GPPA) enzymes play central roles in the bacterial stringent response induced by starvation. The high-resolution crystal structure of the putative Aquifex aeolicus PPX/GPPA phosphatase from the actin-like ATPase domain superfamily has been determined, providing the first insights to features of the common catalytic core of the PPX/GPPA family. The protein has a two-domain structure with an active site located in the interdomain cleft. Two crystal forms were investigated (type I and II) at resolutions of 1.53 and 2.15 A, respectively. This revealed a structural flexibility that has previously been described as a "butterfly-like" cleft opening around the active site in other actin-like superfamily proteins. A calcium ion is observed at the center of this region in type I crystals, substantiating that PPX/GPPA enzymes use metal ions for catalysis. Structural analysis suggests that nucleotides bind at a similar position to that seen in other members of the superfamily.
About this Structure
1T6C is a Single protein structure of sequence from Aquifex aeolicus vf5 with , , and as ligands. Full crystallographic information is available from OCA.
Reference
Structural characterization of the stringent response related exopolyphosphatase/guanosine pentaphosphate phosphohydrolase protein family., Kristensen O, Laurberg M, Liljas A, Kastrup JS, Gajhede M, Biochemistry. 2004 Jul 20;43(28):8894-900. PMID:15248747
Page seeded by OCA on Thu Feb 21 15:10:23 2008
Categories: Aquifex aeolicus vf5 | Single protein | Gajhede, M. | Kastrup, J S. | Kristensen, O. | Laurberg, M. | Liljas, A. | CA | CL | IOD | MPD | Actin-like fold | Alpha/beta protein
