PISA
From Proteopedia
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| - | Protein interfaces, surfaces and assemblies service [[PISA]] at European Bioinformatics Institute http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html, authored by E. Krissinel and K. Henrick. Quoting from the PISA website: ''"PISA is an interactive tool for the exploration of macromolecular (protein, DNA/RNA and ligand) interfaces, prediction of probable quaternary structures (assemblies), database searches of structurally similar interfaces and assemblies, as well as searches on various assembly and PDB entry parameters."''<ref>PMID:17681537</ref> | + | Protein interfaces, surfaces and assemblies service [[PISA]] at European Bioinformatics Institute http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html, authored by E. Krissinel and K. Henrick. Quoting from the PISA website: ''"PISA is an interactive tool for the exploration of macromolecular (protein, DNA/RNA and ligand) interfaces, prediction of probable quaternary structures (assemblies), database searches of structurally similar interfaces and assemblies, as well as searches on various assembly and PDB entry parameters."''<ref>PMID:17681537</ref> PISA is a core part of [[CCP4]].<ref>PMID:15299374</ref> |
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[[Biological unit|Biological units]] displayed in the 'Structure Box' on Proteopedia PDB entry pages (e.g. [[1h88]]) are predictions of the most likely biological unit as calculated by PISA. | [[Biological unit|Biological units]] displayed in the 'Structure Box' on Proteopedia PDB entry pages (e.g. [[1h88]]) are predictions of the most likely biological unit as calculated by PISA. | ||
Revision as of 13:25, 10 October 2009
Protein interfaces, surfaces and assemblies service PISA at European Bioinformatics Institute http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html, authored by E. Krissinel and K. Henrick. Quoting from the PISA website: "PISA is an interactive tool for the exploration of macromolecular (protein, DNA/RNA and ligand) interfaces, prediction of probable quaternary structures (assemblies), database searches of structurally similar interfaces and assemblies, as well as searches on various assembly and PDB entry parameters."[1] PISA is a core part of CCP4.[2]
Biological units displayed in the 'Structure Box' on Proteopedia PDB entry pages (e.g. 1h88) are predictions of the most likely biological unit as calculated by PISA.
References
- ↑ Krissinel E, Henrick K. Inference of macromolecular assemblies from crystalline state. J Mol Biol. 2007 Sep 21;372(3):774-97. Epub 2007 May 13. PMID:17681537 doi:10.1016/j.jmb.2007.05.022
- ↑ . The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr. 1994 Sep 1;50(Pt 5):760-3. PMID:15299374 doi:10.1107/S0907444994003112
