This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 2nmz
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
{{Structure | {{Structure | ||
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2nmz]], resolution 0.97Å (<scene name='initialview01'>default scene</scene>)}}} | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2nmz]], [[Resolution|resolution]] 0.97Å (<scene name='initialview01'>default scene</scene>)}}} |
| - | + | |LIGAND= <scene name='pdbligand=ROC:(2S)-N-[(2S,3R)-4-[(2S,3S,4AS,8AS)-3-(TERT-BUTYLCARBAMOYL)-3,4,4A,5,6,7,8,8A-OCTAHYDRO-1H-ISOQUINOLIN-2-YL]-3-HYDROXY-1-PHENYL-BUTAN-2-YL]-2-(QUINOLIN-2-YLCARBONYLAMINO)BUTANEDIAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | |
| - | |LIGAND= <scene name='pdbligand=ROC:N | + | |
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span> | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span> | ||
|GENE= gag ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 Human immunodeficiency virus 1]) | |GENE= gag ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 Human immunodeficiency virus 1]) | ||
| - | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00077 RVP]</span> | ||
|RELATEDENTRY=[[2nmw|2nmw]], [[2nmy|2nmy]], [[2nnk|2nnk]], [[2nnp|2nnp]] | |RELATEDENTRY=[[2nmw|2nmw]], [[2nmy|2nmy]], [[2nnk|2nnk]], [[2nnp|2nnp]] | ||
| - | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www. | + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum]</span> |
|FUNCTION={{GO|id=GO:0008233 | text = peptidase activity}}{{GO|id=GO:0004190 | text = aspartic-type endopeptidase activity}}{{GO|id=GO:0016787 | text = hydrolase activity}} | |FUNCTION={{GO|id=GO:0008233 | text = peptidase activity}}{{GO|id=GO:0004190 | text = aspartic-type endopeptidase activity}}{{GO|id=GO:0016787 | text = hydrolase activity}} | ||
|PROCESS={{GO|id=GO:0006508 | text = proteolysis}} | |PROCESS={{GO|id=GO:0006508 | text = proteolysis}} | ||
Revision as of 14:50, 7 January 2013
| |||||||||
| 2nmz, resolution 0.97Å () | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||||
| Gene: | gag (Human immunodeficiency virus 1) | ||||||||
| Activity: | HIV-1 retropepsin, with EC number 3.4.23.16 | ||||||||
| Related: | 2nmw, 2nmy, 2nnk, 2nnp | ||||||||
| |||||||||
| |||||||||
| |||||||||
| Resources: | FirstGlance, OCA, RCSB, PDBsum | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
