User:Wayne Decatur/SandboxYeastRibosome

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==Yeast Ribosome based on Cryo-EM and RNA and Protein Homology Modeling==
==Yeast Ribosome based on Cryo-EM and RNA and Protein Homology Modeling==
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<table width='550' align='right' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><applet load='3jyxwvALPHAC.pdb.gz' size='540' frame='true' align='right' scene='User:Wayne_Decatur/SandboxYeastRibosome/3jyxwv/7' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''The Eukaryotic (Budding Yeast) Ribosome''' ([[3jyx]] and [[3jyw]] and [[3jyv]] ),<br>resolution 8.9&Aring; (<scene name='User:Wayne_Decatur/SandboxYeastRibosome/3jyxwv/7'>initial scene</scene>). <br>
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{{Template:80ScryoRIBO}}
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·· {{Link Toggle 80ScryriborRNA}} ·· {{Link Toggle 70SriboProtein}} ··<br>
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·· {{Link Toggle 80ScryribotRNAs}} ·· {{Link Toggle 80Scryribo5SrRNA}} ·· {{Link Toggle 80S58SrRNA}} ·· <br>
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·· {{Link Toggle 80ScryriboLSU}} ·· {{Link Toggle 80ScryriboSSU}} ·· {{Link Toggle BlackWhiteBackground}} ·· </center></td></tr></table>
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Atomic model of a eukaryotic [[ribosome]] obtained by combined cryo-EM and RNA and protein homology modeling. Specifically, cryo-EM reconstruction of the 80S ribosome from the thermophilic fungus ''Thermomyces lanuginosus'' was used as a guide guide for building homology models of the ''S. cerevisiae'' ribosomal proteins and rRNA sequences that fit the cryo-EM map.
Atomic model of a eukaryotic [[ribosome]] obtained by combined cryo-EM and RNA and protein homology modeling. Specifically, cryo-EM reconstruction of the 80S ribosome from the thermophilic fungus ''Thermomyces lanuginosus'' was used as a guide guide for building homology models of the ''S. cerevisiae'' ribosomal proteins and rRNA sequences that fit the cryo-EM map.
{{Link Toggle FancyCartoonHighQualityView}}.
{{Link Toggle FancyCartoonHighQualityView}}.

Revision as of 04:00, 27 January 2010

Yeast Ribosome based on Cryo-EM and RNA and Protein Homology Modeling

 
Drag the structure with the mouse to rotate
The Eukaryotic (Budding Yeast) Ribosome
(optimized versions of 3jyx and 3jyw and 3jyv ), resolution 8.9Å ().

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Atomic model of a eukaryotic ribosome obtained by combined cryo-EM and RNA and protein homology modeling. Specifically, cryo-EM reconstruction of the 80S ribosome from the thermophilic fungus Thermomyces lanuginosus was used as a guide guide for building homology models of the S. cerevisiae ribosomal proteins and rRNA sequences that fit the cryo-EM map. .

About this Structure

This structure is a composite of 3 pdb files optimized for use online:
3jyx is a 3 chains structure of sequences from Thermomyces lanuginosus. Full crystallographic information is available from OCA.
3jyw is a 30 chains structure of sequences from Thermomyces lanuginosus. Full crystallographic information is available from OCA.
3jyv is a 19 chains structure of sequences from Thermomyces lanuginosus. Full crystallographic information is available from OCA.

Reference

  • Taylor DJ, Devkota B, Huang AD, Topf M, Narayanan E, Sali A, Harvey SC, Frank J. Comprehensive molecular structure of the eukaryotic ribosome. Structure. 2009 Dec 9;17(12):1591-604. PMID:20004163 doi:10.1016/j.str.2009.09.015

Proteopedia Page Contributors and Editors (what is this?)

Wayne Decatur

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