User:Eric Martz/Sandbox 10
From Proteopedia
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| + | ==See Also== | ||
| + | * A detailed explanation and tutorial about [http://www2.uah.es/biomodel/en/model2/bilayer/inicio.htm Lipid Bilayers and the Gramicidin Channel]. | ||
| + | * [http://firstglance.jmol.org/fg.htm?mol=http://proteopedia.org/wiki/images/f/fd/Gramicidin_in_bilayer.pdb.gz This model in FirstGlance in Jmol]. | ||
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==Notes== | ==Notes== | ||
* The [[PDB file]] shown here, [[Image:Gramicidin in bilayer.pdb.gz]], was kindly provided by Serge Crouzy. | * The [[PDB file]] shown here, [[Image:Gramicidin in bilayer.pdb.gz]], was kindly provided by Serge Crouzy. | ||
Revision as of 01:57, 5 March 2010
Proposed Title: Gramicidin Channel in Lipid Bilayer
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Two copies of the gramicidin protein are shown here () arranged as they are believed to be when they form a channel through a lipid bilayer membrane[1]. The shape of the protein is shown transparent (ghostly), and a backbone trace connecting the alpha carbon atoms of each amino acid chain is opaque (solid).
- Show of the gramicidin protein chains.
- (Most hydrogen atoms are omitted.)
- Show . Notice how the hydrophobic lipid "tails" exclude water.
- Water passes .
-
Show .
| Remember to use the popup button and then resize the popup window to enlarge the molecular scenes. |
See Also
- A detailed explanation and tutorial about Lipid Bilayers and the Gramicidin Channel.
- This model in FirstGlance in Jmol.
Notes
- The PDB file shown here, Image:Gramicidin in bilayer.pdb.gz, was kindly provided by Serge Crouzy.
References
- ↑ Crouzy S, Woolf TB, Roux B. A molecular dynamics study of gating in dioxolane-linked gramicidin A channels. Biophys J. 1994 Oct;67(4):1370-86. PMID:7529578 doi:http://dx.doi.org/10.1016/S0006-3495(94)80618-6
