This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1dze
From Proteopedia
| Line 1: | Line 1: | ||
| - | [[Image:1dze.gif|left|200px]]<br /><applet load="1dze" size=" | + | [[Image:1dze.gif|left|200px]]<br /><applet load="1dze" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1dze, resolution 2.5Å" /> | caption="1dze, resolution 2.5Å" /> | ||
'''STRUCTURE OF THE M INTERMEDIATE OF BACTERIORHODOPSIN TRAPPED AT 100K'''<br /> | '''STRUCTURE OF THE M INTERMEDIATE OF BACTERIORHODOPSIN TRAPPED AT 100K'''<br /> | ||
==About this Structure== | ==About this Structure== | ||
| - | 1DZE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum] with RET, L1P, L2P, L3P and L4P as [http://en.wikipedia.org/wiki/ligands ligands]. The following page contains interesting information on the relation of 1DZE with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb27_1.html Bacteriorhodopsin]]. Known structural/functional Sites: <scene name='pdbsite=AC1:Ret Binding Site For Chain A'>AC1</scene>, <scene name='pdbsite=AC2:L1p Binding Site For Chain A'>AC2</scene>, <scene name='pdbsite=AC3:L2p Binding Site For Chain A Symmetry Related Subunits C ...'>AC3</scene>, <scene name='pdbsite=AC4:L3p Binding Site For Chain A Symmetry Related Subunits C ...'>AC4</scene>, <scene name='pdbsite=AC5:L4p Binding Site For Chain A Symmetry Related Subunits C ...'>AC5</scene> and <scene name='pdbsite=AC6:L2p Binding Site For Chain A Symmetry Related Subunits C ...'>AC6</scene>. Full crystallographic information is available from [http:// | + | 1DZE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum] with <scene name='pdbligand=RET:'>RET</scene>, <scene name='pdbligand=L1P:'>L1P</scene>, <scene name='pdbligand=L2P:'>L2P</scene>, <scene name='pdbligand=L3P:'>L3P</scene> and <scene name='pdbligand=L4P:'>L4P</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. The following page contains interesting information on the relation of 1DZE with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb27_1.html Bacteriorhodopsin]]. Known structural/functional Sites: <scene name='pdbsite=AC1:Ret+Binding+Site+For+Chain+A'>AC1</scene>, <scene name='pdbsite=AC2:L1p+Binding+Site+For+Chain+A'>AC2</scene>, <scene name='pdbsite=AC3:L2p+Binding+Site+For+Chain+A+Symmetry+Related+Subunits+C+...'>AC3</scene>, <scene name='pdbsite=AC4:L3p+Binding+Site+For+Chain+A+Symmetry+Related+Subunits+C+...'>AC4</scene>, <scene name='pdbsite=AC5:L4p+Binding+Site+For+Chain+A+Symmetry+Related+Subunits+C+...'>AC5</scene> and <scene name='pdbsite=AC6:L2p+Binding+Site+For+Chain+A+Symmetry+Related+Subunits+C+...'>AC6</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DZE OCA]. |
[[Category: Bacteriorhodopsin]] | [[Category: Bacteriorhodopsin]] | ||
[[Category: Halobacterium salinarum]] | [[Category: Halobacterium salinarum]] | ||
| Line 35: | Line 35: | ||
[[Category: sliding]] | [[Category: sliding]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 09:36:13 2008'' |
Revision as of 07:36, 3 February 2008
|
STRUCTURE OF THE M INTERMEDIATE OF BACTERIORHODOPSIN TRAPPED AT 100K
About this Structure
1DZE is a Single protein structure of sequence from Halobacterium salinarum with , , , and as ligands. The following page contains interesting information on the relation of 1DZE with [Bacteriorhodopsin]. Known structural/functional Sites: , , , , and . Full crystallographic information is available from OCA.
Page seeded by OCA on Sun Feb 3 09:36:13 2008
Categories: Bacteriorhodopsin | Halobacterium salinarum | Single protein | Adachi, S. | Hino, T. | Iizuka, T. | Kamiya, N. | Kanamori, E. | Kouyama, T. | Matsui, Y. | Okumura, H. | Sato, H. | Takeda, K. | Yamane, T. | L1P | L2P | L3P | L4P | RET | Halobacteria | Helix | Ion pump | Membrane protein | Photoreceptor | Proton pump | Reaction intermediate | Retinal protein | Sliding
