From Proteopedia

Revision as of 05:00, 26 March 2010

spinqualitylabelsall models PDB ID 2zwh Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image
2zwh, resolution 3.30Å ()
Ligands:	,
Non-Standard Residues:
Structural annotation: Resources: InterPro : Ipr004000, Ipr020902, Ipr004001 Pfam : PF00022 UniProt : P68135
Resources:	FirstGlance, OCA, RCSB, PDBsum
Coordinates:	save as pdb, mmCIF, xml

F-Actin

Filamentous actin (F-actin) is also referred to as microfilament ^[1] and is a highly conserved proteinous component found near ubiquitously in eukaryotic cytoskeletons. F-actin and other actin proteins generally provide a structural role to the cell.

Introduction

Actin is found in nearly all eukaryotic cells and is known primarily for its function as a structural and translocation protein. It also has an ATPase function, as it hydrolyzes ATP --> ADP + Pi and undergoes conformational changes with each hydrolysis. Actin belongs to the actin superfamily, which includes other proteins such as Hsp70 and hexokinase, because of its nucelotide-dependent conformational change reference Graceffa. Prokaryotes are not known to have actin, but do however have an actin homologue, MreB reference

Actin occurs in two forms: globular actin (G-actin), the free monomeric units of actin, and filamentous actin (F-actin) which is the polymer form. These two forms exist in a dynamic equilibrium with one another as ATP-associated polymerization and depolymerization occur continuously within the cell.

Assembly

Monomeric Unit - G-actin

G-actin is the free monomeric form of actin which transitions to F-actin. The structures of globular and filamentous actin are distinct from one another in numerous ways, despite the fact that G-actin comprises F-actin. When the monomeric actin becomes polymerized into F-actin, the unit becomes flattened. G-actin appears to have more ion ligands in its structure, and also has the ligand RHO as opposed to 4-methyl histidine as found in the F-actin structure.

Structure

History of the structure

The F-actin protein was discovered by Straub in 1942. The structure was speculated based on a low-resolution x-ray crystallograph found in 1990 by Holmes et al. and over this time, despite the importance of F-actin in eukaryotic cells, this speculated structure was accepted. A higher resolution structure was only recently deposited in the PDB databank in Decemeber 2008 by Oda et al. ^[2].

Polymer F-actin

spinqualitylabelsall models Filamentous Actin (F-actin) Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

F-actin has the appearance of two right-handed helices. It is actually composed of repeats of 13 actin units for every 6 left-handed turns, spanning a length of 350 Å. ^[3]. Including the ADP and Ca²⁺, the F-actin molecule as shown here consists of 377 residues (43kDa), two major domains and a nucleotide-binding cleft^[4]. Depending on the state of the bound nucleotide, the conformation of F-actin changes. It is most closed in its ADP+Pi bound state, and most open after the loss of gamma phosphate.

Domains

Function

Enzymatic Role

Active Site

Ligand

Structural Role

References

1. ↑ Microfilament - Wikipedia, the free encyclopedia. http://en.wikipedia.org/wiki/Microfilaments. Date accessed: March 16th, 2010.
2. ↑ Oda T, Iwasa M, Aihara T, Maéda Y, and Narita A. 2009. The nature of the globular-to fibrous actin transition. Nature,457(7228):441-445. PMID: 19158791
3. ↑ Holmes, K.C., Popp, D., Gebhard, W. and Kabsch, W. 1990. Atomic model of the actin filament. Nature,347(6288):44-49. PMID: 2395461
4. ↑ oda