1rdv
From Proteopedia
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| - | [[Image:1rdv.jpg|left|200px]]<br /><applet load="1rdv" size=" | + | [[Image:1rdv.jpg|left|200px]]<br /><applet load="1rdv" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1rdv, resolution 2.0Å" /> | caption="1rdv, resolution 2.0Å" /> | ||
'''RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, TRIGONAL CRYSTAL FORM'''<br /> | '''RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, TRIGONAL CRYSTAL FORM'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1RDV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris] with FE as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Site: <scene name='pdbsite=FE:Fe Coordination Site'>FE</scene>. Full crystallographic information is available from [http:// | + | 1RDV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris] with <scene name='pdbligand=FE:'>FE</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Site: <scene name='pdbsite=FE:Fe+Coordination+Site'>FE</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RDV OCA]. |
==Reference== | ==Reference== | ||
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[[Category: sulfate-reducing bacterium]] | [[Category: sulfate-reducing bacterium]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 10:01:41 2008'' |
Revision as of 08:01, 3 February 2008
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RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, TRIGONAL CRYSTAL FORM
Overview
The structures of two crystal forms (form I, P3221, a = b = 43.7, c = 50.7, A; form II, P21, a = 27.3, b = 44.9, c = 51.2 A and beta = 90. 6 degrees ), of the rubredoxin from Desulfovibrio vulgaris Miyazaki F have been solved, by the molecular-replacement method. Form I has been refined at a, resolution of 2.0 A to an R value of 20.8% and includes 32 water, molecules. Form II includes 86 water molecules and has been refined at 1.9, A resolution to an R value of 17.5%. In form II, there are three molecules, in the asymmetric unit with the molecules related by a, non-crystallographic 32 symmetry axis. In both crystal forms, it was found, that only a few residues effectively participate in the formation of, intermolecular contacts along both the crystallographic (form I) and the, non-crystallographic (form II) 32 axes. The crystal structure of the form, II crystal is compared with those of other rubredoxin molecules from, anaerobic bacteria. From this comparison, a similarity in the core region, which is composed of aromatic residues and includes the active centre, has, been revealed.
About this Structure
1RDV is a Single protein structure of sequence from Desulfovibrio vulgaris with as ligand. Known structural/functional Site: . Full crystallographic information is available from OCA.
Reference
Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms., Misaki S, Morimoto Y, Ogata M, Yagi T, Higuchi Y, Yasuoka N, Acta Crystallogr D Biol Crystallogr. 1999 Feb;55(Pt 2):408-13. PMID:10089348
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