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Alignment of 1rpu vs 1r9f
From Proteopedia
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1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134<br> | 1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134<br> | ||
SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+<br> | SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+<br> | ||
| - | + | 1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120<br> | |
</font></b></small><br> | </font></b></small><br> | ||
| + | |||
| + | [[1rpu]] = Carnation italian ringspot virus p19<br> | ||
| + | [[1r9f]] = Tomato bushy stunt virus p19 | ||
Revision as of 02:40, 16 May 2010
Sequences in structures obtained from PDBsum and aligned.
Alignment from: protein-protein BLAST
Length=121
Score = 226 bits (576)
Expect = 1e-64
Method: Compositional matrix adjust.
Identities = 106/119 (89%)
Positives = 114/119 (95%)
Gaps = 3/119 (2%)
1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75
+TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG
1r9f 2 MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61
1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134
SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+
1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120
1rpu = Carnation italian ringspot virus p19
1r9f = Tomato bushy stunt virus p19
