Alignment of 1rpu vs 1r9f
From Proteopedia
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| + | [[1rpu]] = Carnation italian ringspot virus p19<br> | ||
| + | [[1r9f]] = Tomato bushy stunt virus p19 | ||
| + | |||
Sequences in structures obtained from PDBsum and aligned.<br> | Sequences in structures obtained from PDBsum and aligned.<br> | ||
Alignment from: [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&BLAST_SPEC=blast2seq&LINK_LOC=blasttab&LAST_PAGE=blastn&BLAST_INIT=blast2seq&QUERY=%3E1rpu%3AA%0ANDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV&SUBJECTS=%3E1r9f%3AA%0AHMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA protein-protein BLAST]<br> | Alignment from: [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&BLAST_SPEC=blast2seq&LINK_LOC=blasttab&LAST_PAGE=blastn&BLAST_INIT=blast2seq&QUERY=%3E1rpu%3AA%0ANDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV&SUBJECTS=%3E1r9f%3AA%0AHMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA protein-protein BLAST]<br> | ||
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1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120<br> | 1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120<br> | ||
</font></b></small><br> | </font></b></small><br> | ||
| - | |||
| - | [[1rpu]] = Carnation italian ringspot virus p19<br> | ||
| - | [[1r9f]] = Tomato bushy stunt virus p19 | ||
Revision as of 02:41, 16 May 2010
1rpu = Carnation italian ringspot virus p19
1r9f = Tomato bushy stunt virus p19
Sequences in structures obtained from PDBsum and aligned.
Alignment from: protein-protein BLAST
Length=121
Score = 226 bits (576)
Expect = 1e-64
Method: Compositional matrix adjust.
Identities = 106/119 (89%)
Positives = 114/119 (95%)
Gaps = 3/119 (2%)
1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75
+TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG
1r9f 2 MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61
1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134
SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+
1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120
