AChE inhibitors and substrates
From Proteopedia
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[[Category: catalytic triad]] | [[Category: catalytic triad]] | ||
Revision as of 16:43, 26 January 2008
AChE bivalent inhibitors
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Among the most interesting drugs that have been designed to inhibit acetylcholinesterase are those that have two binding sites that bind both the peripheral and catatylic sites simultaneously. Such drugs bind highly specificly and strongly. A good example is .
It appears that the principal interaction between the aceylcholine and the enzyme is relatively newly discovered cation-pi interactions between the cationic moiety of the substrate and the many aromatic residues lining the catalytic gorge. Unlike most interatomic interactions in chemistry, cation-pi interactions are unusual in that their energy hardly changes as the cationic and aromatic ring centers vary between 4 and 7 Angstroms apart, and for a wide variety of relative orientations of the aromatic rings. This gives the substrate an energetically smooth ride down the gorge with few bumps or barriers to impede passage down the gorge.
Most acetylcholinesterases have a net negative charge and a large patch of negative potential around the entrance to the active site gorge, which may be useful to attract the positively charged acetycholine substrate to the site. As one travels down the gorge, this potential becomes increasingly more and more negative, reaching a peak at the active site at the base. Because of this potential, the peripherial site is thought to act like a substrate trap, that forces practically molecule of substrate that reaches the peripheral site to travel down the gorge to the active site, that probably contributes greatly to the extremely rapid rate of degrading the substrate. This whole enzyme therefore acts like a brilliantly designed natural vacuum cleaner that clears the neurotransmitter out of the synapse extremely quickly. Yet to be solved, however, is how the products clear the active site rapidly, whether back through the gorge, or out a back door on the other side of the protein that quickly opens each catalytic cycle (Try 84 is actually near the surface of the 'underside' of the protein.)
Selected 3D Structures of AChE
- 2ace This is the original solved structure for Torpedo Californica
- 1ea5 This is one of the highest quality representative X-ray structures in the PDB.
- 1eve The E2020 (Aricept) complex.
- 1ax9 Endrophonium complex.
- 1vot Complex with Huperzine, a Chinese folk medicine.
- 1fss Complex with snake venum toxin Fasciculin-II.
- 1vzj Structure of the tetrameization domain of acetylcholinesterase.
More structures can be obtained by searching for
AChE
Proteopedia Page Contributors and Editors (what is this?)
Alexander Berchansky, Joel L. Sussman, Michal Harel, Jaime Prilusky, David Canner
