User:Jennifer VanAusdall/Sandbox 1
From Proteopedia
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==10 established protein families== | ==10 established protein families== | ||
'''AAT: Amino Acid Transporter''' | '''AAT: Amino Acid Transporter''' | ||
| - | Unique to bacteria, this is the largest family within the APC superfamily. | + | |
| + | Unique to bacteria, this is the largest family within the APC superfamily. Members of this family have short hydrophilic extensions at both termini. | ||
'''APA: Basic Amino Acid/Polyamine Transporter''' | '''APA: Basic Amino Acid/Polyamine Transporter''' | ||
| + | |||
The APA family is also unique to bacteria. | The APA family is also unique to bacteria. | ||
'''CAT: Cationic Amino Acid Transporter''' | '''CAT: Cationic Amino Acid Transporter''' | ||
| - | Members of the CAT family are ubiquitous, containing 14 TMs in eukaryotes and 12 TMs in prokaryotes. | + | |
| + | Members of the CAT family are ubiquitous, containing 14 TMs in eukaryotes and 12 TMs in prokaryotes. These proteins have short, hydrophilic, N-terminal extensions. | ||
'''ACT: Amino Acid/Choline Transporter''' | '''ACT: Amino Acid/Choline Transporter''' | ||
| - | Members of the CAT family can be found in yeast, plants, and fungi. | + | |
| + | Members of the CAT family can be found in yeast, plants, and fungi. These proteins have short hydrophilic extensions at the C and N termini. | ||
'''EAT: Ethanolamine Transporter''' | '''EAT: Ethanolamine Transporter''' | ||
| + | |||
| + | Members of the EAT family are found in bacteria. | ||
'''ABT: Archaeal/Bacterial Transporter''' | '''ABT: Archaeal/Bacterial Transporter''' | ||
| + | |||
| + | As the name suggests, members of the ABT family are found in archaea and bacteria. One member (Cat1 Afu) of this family exhibits a long, C-terminal extension that may function in interactions with other proteins. | ||
'''GGA: Glutamate:GABA Antiporter''' | '''GGA: Glutamate:GABA Antiporter''' | ||
| + | |||
| + | Members of the GGA family are found only in bacteria. There proteins have short, hydrophilic, N-terminal extensions. | ||
'''LAT: L-type Amino Acid Transporter''' | '''LAT: L-type Amino Acid Transporter''' | ||
| + | |||
| + | Members of the LAT family have been identified in animals and yeast. | ||
'''SPG: Spore Germination Protein''' | '''SPG: Spore Germination Protein''' | ||
| + | |||
Members of this family are found in prokaryotes and exhibit only 10 transmembrane segments. The 2 segments closest to the C-terminus in other members of this super family appear to have been cleaved when this family was evolving. None of the proteins in this family have been identified as transporters, leading to the possibility that transmembrane segments 11 and 12 are vital for transport function. | Members of this family are found in prokaryotes and exhibit only 10 transmembrane segments. The 2 segments closest to the C-terminus in other members of this super family appear to have been cleaved when this family was evolving. None of the proteins in this family have been identified as transporters, leading to the possibility that transmembrane segments 11 and 12 are vital for transport function. | ||
'''YAT: Yeast Amino Acid Transporter''' | '''YAT: Yeast Amino Acid Transporter''' | ||
| + | |||
| + | Members of the YAT family have been identified in both yeast and fungi. Some members of this family exhibit long, N-terminal, hydrophilic extensions beyond the 12 TMs. | ||
==LAT1 - an example from the LAT family== | ==LAT1 - an example from the LAT family== | ||
==AdiC - an example from the APA family== | ==AdiC - an example from the APA family== | ||
Revision as of 23:47, 2 October 2010
Contents |
APC Superfamily
The amino acid/polyamine/organocation (APC) superfamily is among the largest transport superfamilies identified.
All members of this superfamily exhibit a uniform topology formed by a single polypeptide chain that crosses the membrane 12 times, unless otherwise noted (source).
10 established protein families
AAT: Amino Acid Transporter
Unique to bacteria, this is the largest family within the APC superfamily. Members of this family have short hydrophilic extensions at both termini.
APA: Basic Amino Acid/Polyamine Transporter
The APA family is also unique to bacteria.
CAT: Cationic Amino Acid Transporter
Members of the CAT family are ubiquitous, containing 14 TMs in eukaryotes and 12 TMs in prokaryotes. These proteins have short, hydrophilic, N-terminal extensions.
ACT: Amino Acid/Choline Transporter
Members of the CAT family can be found in yeast, plants, and fungi. These proteins have short hydrophilic extensions at the C and N termini.
EAT: Ethanolamine Transporter
Members of the EAT family are found in bacteria.
ABT: Archaeal/Bacterial Transporter
As the name suggests, members of the ABT family are found in archaea and bacteria. One member (Cat1 Afu) of this family exhibits a long, C-terminal extension that may function in interactions with other proteins.
GGA: Glutamate:GABA Antiporter
Members of the GGA family are found only in bacteria. There proteins have short, hydrophilic, N-terminal extensions.
LAT: L-type Amino Acid Transporter
Members of the LAT family have been identified in animals and yeast.
SPG: Spore Germination Protein
Members of this family are found in prokaryotes and exhibit only 10 transmembrane segments. The 2 segments closest to the C-terminus in other members of this super family appear to have been cleaved when this family was evolving. None of the proteins in this family have been identified as transporters, leading to the possibility that transmembrane segments 11 and 12 are vital for transport function.
YAT: Yeast Amino Acid Transporter
Members of the YAT family have been identified in both yeast and fungi. Some members of this family exhibit long, N-terminal, hydrophilic extensions beyond the 12 TMs.
