Proteopedia:Supplementary materials

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Articles in Proteopedia can be supplementary materials for publications in scientific journals. Such articles can enable readers to rotate molecular scenes with the same initial orientation, color schemes, and labeling as figures in the publication. Links to the supplementary materials in Proteopedia can be placed in the text of the publication, and/or in the .doc file included on the journal website as supplementary materials. The Proteopedia article can be developed in advance of publication, yet hidden from viewing by visitors to Proteopedia until publication occurs (see [[Proteopedia:Workbench]]).
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==Examples==
==Examples==
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*[[3btp]] offers supplementary material for a publication in ''Proc. Natl. Acad. Sci. USA''<ref>PMID:18678909</ref>.
*[[3btp]] offers supplementary material for a publication in ''Proc. Natl. Acad. Sci. USA''<ref>PMID:18678909</ref>.
*[[User:Oleg_Kovalevskiy/Engineered mutants of HlyIIR|Engineered mutants of HlyIIR]] provides supplementary figures for a [http://www3.interscience.wiley.com/journal/123272500/abstract publication in ''Proteins'']<ref>PMID: 20225260</ref>.
*[[User:Oleg_Kovalevskiy/Engineered mutants of HlyIIR|Engineered mutants of HlyIIR]] provides supplementary figures for a [http://www3.interscience.wiley.com/journal/123272500/abstract publication in ''Proteins'']<ref>PMID: 20225260</ref>.
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===Interactive 3D Compliments (I3DC)in Proteopedia===
 
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See [[Interactive_3D_Complement_in_Proteopedia| Interactive 3D Compliments on Proteopedia]] for a list of all I3DC collaborations with journals.
 
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====The Journal of Bioinorganic Chemistry publishes Interactive 3D Complements in Proteopedia====
 
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*[[Journal:JBIC:1|JBIC #1]]
 
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*[[Journal:JBIC:2|JBIC #2]]
 
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==Methods==
 
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Proteopedia articles destined to be supplementary materials for journal publication can be developed in advance of publication, yet hidden from visitors to Proteopedia until the date of publication. Methods for doing this are described at [[Proteopedia:Workbench]].
 
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Links to the supplementary materials in Proteopedia can be placed in the text of the publication, and/or in the .doc file included on the journal website as supplementary materials.
 
==External Resources==
==External Resources==

Revision as of 22:25, 8 February 2011


Contents

Examples

External Resources

Some journals have interactive figures in Jmol incorporated into online articles. These include Biochemical Journal and ACS Chemical Biology. Examples may be found at MoleculesInMotion.Com.

The International Union of Crystallography has provided a Toolkit for Jmol-Enhanced Figures. Announced in November, 2009, it was developed by Brian McMahon, Bob Hanson, and several students, and is described in this article in the Journal of Applied Crystallogaphy.

Other uses of Jmol in journals will be found at Journals Using Jmol (in the wiki at Jmol.Org).

See Also

References

  1. Dym O, Albeck S, Unger T, Jacobovitch J, Branzburg A, Michael Y, Frenkiel-Krispin D, Wolf SG, Elbaum M. Crystal structure of the Agrobacterium virulence complex VirE1-VirE2 reveals a flexible protein that can accommodate different partners. Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11170-5. Epub 2008 Aug 4. PMID:18678909
  2. Kovalevskiy OV, Solonin AS, Antson AA. Structural investigation of transcriptional regulator HlyIIR: Influence of a disordered region on protein fold and dimerization. Proteins. 2010 Feb 3. PMID:20225260 doi:10.1002/prot.22700

Proteopedia Page Contributors and Editors (what is this?)

Eric Martz, Eran Hodis, David Canner

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