2v8h
From Proteopedia
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==About this Structure== | ==About this Structure== | ||
| - | 2V8H is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Lachancea_kluyveri Lachancea kluyveri] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=URP:'>URP</scene> and <scene name='pdbligand=BCN:'>BCN</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Beta-ureidopropionase Beta-ureidopropionase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.6 3.5.1.6] Known structural/functional Sites: <scene name='pdbsite=AC1:Zn Binding Site For Chain A'>AC1</scene>, <scene name='pdbsite=AC2:Zn Binding Site For Chain A'>AC2</scene>, <scene name='pdbsite=AC3:Urp Binding Site For Chain A'>AC3</scene>, <scene name='pdbsite=AC4:Bcn Binding Site For Chain A'>AC4</scene>, <scene name='pdbsite=AC5:Zn Binding Site For Chain B'>AC5</scene>, <scene name='pdbsite=AC6:Zn Binding Site For Chain B'>AC6</scene>, <scene name='pdbsite=AC7:Urp Binding Site For Chain B'>AC7</scene>, <scene name='pdbsite=AC8:Bcn Binding Site For Chain B'>AC8</scene>, <scene name='pdbsite=AC9:Zn Binding Site For Chain C'>AC9</scene>, <scene name='pdbsite=BC1:Zn Binding Site For Chain C'>BC1</scene>, <scene name='pdbsite=BC2:Urp Binding Site For Chain C'>BC2</scene>, <scene name='pdbsite=BC3:Bcn Binding Site For Chain C'>BC3</scene>, <scene name='pdbsite=BC4:Zn Binding Site For Chain D'>BC4</scene>, <scene name='pdbsite=BC5:Zn Binding Site For Chain D'>BC5</scene>, <scene name='pdbsite=BC6:Urp Binding Site For Chain D'>BC6</scene> and <scene name='pdbsite=BC7:Bcn Binding Site For Chain D'>BC7</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V8H OCA]. | + | 2V8H is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Lachancea_kluyveri Lachancea kluyveri] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=URP:'>URP</scene> and <scene name='pdbligand=BCN:'>BCN</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Beta-ureidopropionase Beta-ureidopropionase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.6 3.5.1.6] Known structural/functional Sites: <scene name='pdbsite=AC1:Zn+Binding+Site+For+Chain+A'>AC1</scene>, <scene name='pdbsite=AC2:Zn+Binding+Site+For+Chain+A'>AC2</scene>, <scene name='pdbsite=AC3:Urp+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Bcn+Binding+Site+For+Chain+A'>AC4</scene>, <scene name='pdbsite=AC5:Zn+Binding+Site+For+Chain+B'>AC5</scene>, <scene name='pdbsite=AC6:Zn+Binding+Site+For+Chain+B'>AC6</scene>, <scene name='pdbsite=AC7:Urp+Binding+Site+For+Chain+B'>AC7</scene>, <scene name='pdbsite=AC8:Bcn+Binding+Site+For+Chain+B'>AC8</scene>, <scene name='pdbsite=AC9:Zn+Binding+Site+For+Chain+C'>AC9</scene>, <scene name='pdbsite=BC1:Zn+Binding+Site+For+Chain+C'>BC1</scene>, <scene name='pdbsite=BC2:Urp+Binding+Site+For+Chain+C'>BC2</scene>, <scene name='pdbsite=BC3:Bcn+Binding+Site+For+Chain+C'>BC3</scene>, <scene name='pdbsite=BC4:Zn+Binding+Site+For+Chain+D'>BC4</scene>, <scene name='pdbsite=BC5:Zn+Binding+Site+For+Chain+D'>BC5</scene>, <scene name='pdbsite=BC6:Urp+Binding+Site+For+Chain+D'>BC6</scene> and <scene name='pdbsite=BC7:Bcn+Binding+Site+For+Chain+D'>BC7</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V8H OCA]. |
==Reference== | ==Reference== | ||
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[[Category: hydrolase]] | [[Category: hydrolase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 10:50:27 2008'' |
Revision as of 08:50, 3 February 2008
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CRYSTAL STRUCTURE OF MUTANT E159A OF BETA-ALANINE SYNTHASE FROM SACCHAROMYCES KLUYVERI IN COMPLEX WITH ITS SUBSTRATE N-CARBAMYL-BETA-ALANINE
Overview
beta-Alanine synthase is the final enzyme of the reductive pyrimidine, catabolic pathway, which is responsible for the breakdown of uracil and, thymine in higher organisms. The fold of the homodimeric enzyme from the, yeast Saccharomyces kluyveri identifies it as a member of the AcyI/M20, family of metallopeptidases. Its subunit consists of a catalytic domain, harboring a di-zinc center and a smaller dimerization domain. The present, site-directed mutagenesis studies identify Glu(159) and Arg(322) as, crucial for catalysis and His(262) and His(397) as functionally important, but not essential. We determined the crystal structures of wild-type, beta-alanine synthase in complex with the reaction product beta-alanine, and of the mutant E159A with the substrate N-carbamyl-beta-alanine, revealing the closed state of a dimeric AcyI/M20 metallopeptidase-like, enzyme. Subunit closure is achieved by a approximately 30 degrees rigid, body domain rotation, which completes the active site by integration of, substrate binding residues that belong to the dimerization domain of the, same or the partner subunit. Substrate binding is achieved via a salt, bridge, a number of hydrogen bonds, and coordination to one of the zinc, ions of the di-metal center.
About this Structure
2V8H is a Single protein structure of sequence from Lachancea kluyveri with , and as ligands. Active as Beta-ureidopropionase, with EC number 3.5.1.6 Known structural/functional Sites: , , , , , , , , , , , , , , and . Full crystallographic information is available from OCA.
Reference
Crystal structures of yeast -alanine synthase complexes reveal the mode of substrate binding and large scale domain closure movements., Lundgren S, Andersen B, Piskur J, Dobritzsch D, J Biol Chem. 2007 Dec 7;282(49):36037-47. Epub 2007 Oct 4. PMID:17916556
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