Nucleoporin

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		+	==NUP2==
	[[3n7c]] – NUP2 RANBD – ''Ashbya gossypii''<br />		[[3n7c]] – NUP2 RANBD – ''Ashbya gossypii''<br />
	[[2c1t]] – yNUP2 N-terminal+importrin alpha subunit - yeast<br />		[[2c1t]] – yNUP2 N-terminal+importrin alpha subunit - yeast<br />
		+	==NUP35==
	[[1wwh]] – mNUP35 MPPN domain - mouse<br />		[[1wwh]] – mNUP35 MPPN domain - mouse<br />
		+	==NUP50==
	[[2ec1]] – hNUP50 RANBD - human<br />		[[2ec1]] – hNUP50 RANBD - human<br />
	[[2c1m]] – mNUP50 N-terminal+importin <br />		[[2c1m]] – mNUP50 N-terminal+importin <br />
		+	==NUP53==
		+	[[3p3d]] - NUP53 RRM domain - Pischia guillermondii
		+	==NUP58==
	[[2osz]] – rNUP58/45 - rat<br />		[[2osz]] – rNUP58/45 - rat<br />
		+	==NUP84==
	[[3jro]], [[3iko]] – yNUP84+NUP145+protein Sec13<br />		[[3jro]], [[3iko]] – yNUP84+NUP145+protein Sec13<br />
		+	==NUP85==
	[[3f3f]], [[3f3g]], [[3f3p]], [[3ewe]] – yNUP85+Seh1<br />		[[3f3f]], [[3f3g]], [[3f3p]], [[3ewe]] – yNUP85+Seh1<br />
		+	==NUP98==
	[[3mmy]] – hNUP98 fragment+mRNA export factor <br />		[[3mmy]] – hNUP98 fragment+mRNA export factor <br />
	[[2q5x]], [[2q5y]] – hNUP98 C-terminal<br />		[[2q5x]], [[2q5y]] – hNUP98 C-terminal<br />
	[[1ko6]] – hNUP98 C-terminal<br />		[[1ko6]] – hNUP98 C-terminal<br />
		+	==NUP100==
	[[3nf5]] – NUP100 C-terminal – ''Candida glabrata''<br />		[[3nf5]] – NUP100 C-terminal – ''Candida glabrata''<br />
		+	==NUP107==
	[[3i4r]], [[3cqc]], [[3cqg]] – hNUP107+NUP133<br />		[[3i4r]], [[3cqc]], [[3cqg]] – hNUP107+NUP133<br />
		+	==NUP116==
	[[2aiv]] – yNUP116 C-terminal - NMR<br />		[[2aiv]] – yNUP116 C-terminal - NMR<br />
		+	==NUP120==
	[[3f7f]], [[3h7n]], [[3hxr]] – yNUP120<br />		[[3f7f]], [[3h7n]], [[3hxr]] – yNUP120<br />
		+	==NUP133==
	[[1xks]] – hNUP133 N-terminal<br />		[[1xks]] – hNUP133 N-terminal<br />
	[[3kfo]] – yNUP133 C-terminal <br />		[[3kfo]] – yNUP133 C-terminal <br />
		+	==NUP145==
	[[3bg0]], [[3bg1]] – hNUP145+Sec13-related protein<br />		[[3bg0]], [[3bg1]] – hNUP145+Sec13-related protein<br />
	[[3kep]], [[3kes]] – yNUP145 autoproteolytic domain<br />		[[3kep]], [[3kes]] – yNUP145 autoproteolytic domain<br />
	[[3jrp]] - yNUP145+protein Sec13<br />		[[3jrp]] - yNUP145+protein Sec13<br />
		+	==NUP153==
	[[3gj3]], [[3gj4]], [[3gj5]], [[3gj6]], [[3gj7]], [[3gj8]], [[3ch5]] – hNUP153+RAN<br />		[[3gj3]], [[3gj4]], [[3gj5]], [[3gj6]], [[3gj7]], [[3gj8]], [[3ch5]] – hNUP153+RAN<br />
	[[2ebq]], [[2ebr]], [[2ebv]], [[2gqe]] - hNUP153 RANBD – NMR<br />		[[2ebq]], [[2ebr]], [[2ebv]], [[2gqe]] - hNUP153 RANBD – NMR<br />
	[[2k0c]] – rNUP153 RANBD – NMR<br />		[[2k0c]] – rNUP153 RANBD – NMR<br />
		+	==NUP159==
	[[1xip]] – yNUP159 N-terminal<br />		[[1xip]] – yNUP159 N-terminal<br />
		+	==NUP170==
	[[3i5p]], [[3i5q]] – yNUP170<br />		[[3i5p]], [[3i5q]] – yNUP170<br />
		+	==NUP214==
	[[3fmo]], [[3fmp]], [[3fhc]] – hNUP214+dead-box helicase<br />		[[3fmo]], [[3fmp]], [[3fhc]] – hNUP214+dead-box helicase<br />
	[[2oit]] – hNUP214 N-terminal<br />		[[2oit]] – hNUP214 N-terminal<br />
		+	==NUP358==
	[[1z5s]] – hNUP358 IR1 domain+ubiquitin-conjugating enzyme+SMT3C+RAN C-terminal<br />		[[1z5s]] – hNUP358 IR1 domain+ubiquitin-conjugating enzyme+SMT3C+RAN C-terminal<br />
	[[1xke]] - hNUP358 RANBD - NMR<br />		[[1xke]] - hNUP358 RANBD - NMR<br />
		+	==NUP1P==
	[[2bpt]] – yNUP1P+importin β subunit<br />		[[2bpt]] – yNUP1P+importin β subunit<br />
		+	==NUP2P==
	[[1un0]] – yNUP2P N-terminal+importrin α subunit<br />		[[1un0]] – yNUP2P N-terminal+importrin α subunit<br />
		+	==NUP-NSP1==
	[[1o6o]] – yNUP-NSP1 residues 497-608+importrin β subunit<br />		[[1o6o]] – yNUP-NSP1 residues 497-608+importrin β subunit<br />
		+	==NUP-CDC31==
	[[2doq]], [[2gv5]] – yNUP-CDC31+SFI1P<br />		[[2doq]], [[2gv5]] – yNUP-CDC31+SFI1P<br />
	[[3fwb]], [[3fwc]] - yNUP-CDC31+SAC3<br />		[[3fwb]], [[3fwc]] - yNUP-CDC31+SAC3<br />

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Revision as of 11:07, 20 March 2011

Template:STRUCTURE 1xip Nucleoporins (NUP) are constituents of the nuclear pore complex which regulates the flow of macromolecules across the nuclear envelope. They are named according to their molecular weights. They contain a domain which binds the protein RAN (RANBD). The images at the left and at the right correspond to one representative Nucleoporin structure, i.e. crystal structure of yeast Nucleoporin NUP159 from Saccharomyces cerevisiae (1xip),

3D Structures of Nucleoporin

NUP2

3n7c – NUP2 RANBD – Ashbya gossypii
2c1t – yNUP2 N-terminal+importrin alpha subunit - yeast

NUP35

1wwh – mNUP35 MPPN domain - mouse

NUP50

2ec1 – hNUP50 RANBD - human
2c1m – mNUP50 N-terminal+importin

NUP53

3p3d - NUP53 RRM domain - Pischia guillermondii

NUP58

2osz – rNUP58/45 - rat

NUP84

3jro, 3iko – yNUP84+NUP145+protein Sec13

NUP85

3f3f, 3f3g, 3f3p, 3ewe – yNUP85+Seh1

NUP98

3mmy – hNUP98 fragment+mRNA export factor
2q5x, 2q5y – hNUP98 C-terminal
1ko6 – hNUP98 C-terminal

NUP100

3nf5 – NUP100 C-terminal – Candida glabrata

NUP107

3i4r, 3cqc, 3cqg – hNUP107+NUP133

NUP116

2aiv – yNUP116 C-terminal - NMR

NUP120

3f7f, 3h7n, 3hxr – yNUP120

NUP133

1xks – hNUP133 N-terminal
3kfo – yNUP133 C-terminal

NUP145

3bg0, 3bg1 – hNUP145+Sec13-related protein
3kep, 3kes – yNUP145 autoproteolytic domain
3jrp - yNUP145+protein Sec13

NUP153

3gj3, 3gj4, 3gj5, 3gj6, 3gj7, 3gj8, 3ch5 – hNUP153+RAN
2ebq, 2ebr, 2ebv, 2gqe - hNUP153 RANBD – NMR
2k0c – rNUP153 RANBD – NMR

NUP159

1xip – yNUP159 N-terminal

NUP170

3i5p, 3i5q – yNUP170

NUP214

3fmo, 3fmp, 3fhc – hNUP214+dead-box helicase
2oit – hNUP214 N-terminal

NUP358

1z5s – hNUP358 IR1 domain+ubiquitin-conjugating enzyme+SMT3C+RAN C-terminal
1xke - hNUP358 RANBD - NMR

NUP1P

2bpt – yNUP1P+importin β subunit

NUP2P

1un0 – yNUP2P N-terminal+importrin α subunit

NUP-NSP1

1o6o – yNUP-NSP1 residues 497-608+importrin β subunit

NUP-CDC31

2doq, 2gv5 – yNUP-CDC31+SFI1P
3fwb, 3fwc - yNUP-CDC31+SAC3
2rfo, 2qx5 – yNic96
1gyb – NUP+yNTF2