Sandbox6 Eric Martz
From Proteopedia
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<span style="font-size:150%"><font color="red">Please do not edit this page. Eric Martz, February 2011.</font></span> | <span style="font-size:150%"><font color="red">Please do not edit this page. Eric Martz, February 2011.</font></span> | ||
| - | + | ===Homology Model for 83-341=== | |
<Structure size='450' frame='true' align='right' scene='Sandbox6_Eric_Martz/83-341/1' /> | <Structure size='450' frame='true' align='right' scene='Sandbox6_Eric_Martz/83-341/1' /> | ||
*Homology model of 83-341 on template chain A of [[3e4c]], 52% sequence identity (<scene name='Sandbox6_Eric_Martz/83-341/1'>restore initial scene</scene>). | *Homology model of 83-341 on template chain A of [[3e4c]], 52% sequence identity (<scene name='Sandbox6_Eric_Martz/83-341/1'>restore initial scene</scene>). | ||
Revision as of 19:52, 7 February 2011
Please do not edit this page. Eric Martz, February 2011.
Homology Model for 83-341
|
- Homology model of 83-341 on template chain A of 3e4c, 52% sequence identity ().
| Amino Terminus | Carboxy Terminus |
- .
- The seems unremarkable. Bear in mind that sidechain positions are incorrect in a homology model.
Anionic (-) / Cationic (+)
- The inner face of 95-140 is . Bear in mind that sidechain positions are incorrect in a homology model. . The distribution of hydrophobic residues in 83-140 of the homology model is similar to that in the .
- The inner face of 95-140 is , even based upon a multiple sequence alignment that includes mostly types other than 12[1] .
- When the multiple sequence alignment is limited to the 14 type-12 sequences available from Uniprot (APD 0.30), most of the residues have insufficient data, but a , namely Asn130, Val135, Val136, Glu139, Asn140. .
The homology model can be downloaded from homology-model-83-341.
Notes
- ↑ ConSurf run using 80 sequences from the Uniref-90 sequence database. MSA average pairwise distance (APD) 0.94.
