Sandbox7 Eric Martz

(Difference between revisions)

Revision as of 03:10, 27 June 2011

Please do not edit this page. Thanks, User:Eric Martz, June 26, 2011.

Proposed title: Temperature Color Schemes

Jmol offers two methods for coloring by temperature value. (For an introduction to the temperature value or B factor, please see Temperature value.)

SAT colors button	Jmol command	Blue	White	Red
temperature, fixed	color fixedTemperature	0	50	100
temperature, relative	color relativeTemperature*	minimum value	unclear	maximum value

*The relativeTemperature color scheme is the same as the temperature color scheme.

Resolution, PDB ID	Min	Av	Rel. White	Max
1cbn	2	5	11	20
1io1	4	29	36	68
1uwb	10	67	54	100
3a8n	4	107	--	203
3lvh	50	103	--	328

Other examples:

2zqp 6.0 Å Temperature min/av/max: 328/328/328. Fixed is red; relative is white.
1bdx 6.0 Å Temperature min/av/max: 30/30/30. Fixed is light blue; relative is white.
1qd7 5.5 Å Temperature min/av/max: 0.0/19/102. Fixed & relative seem identical.

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  </td>
  </tr><tr>
+ <td>
+<scene name='Sandbox7_Eric_Martz/Fixtemp_4-5a/1'>4.5 Angstroms</scene> [[3a8n]]
+ </td>
+ <td>
+ </td>
+ <td>
+ </td>
+ <td>
+--
+ </td>
+ <td>
+ </td>
+ </tr>
+<tr>
  <td>
 <scene name='Sandbox7_Eric_Martz/Fixtemp_9-0a/1'>9.0 Angstroms</scene> [[3lvh]]
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  </td>
- </tr>
+ </tr></table>
-</table>
 <jmol>