Histone

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== 3D Structures of histone ==
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== 3D Structures of histone ==
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''Updated December 2011''
===Histone===
===Histone===
[[1yqa]] – yH1 (mutant) – yeast – NMR<BR />
[[1yqa]] – yH1 (mutant) – yeast – NMR<BR />
-
[[1uss]], [[1ust]] – yH1 globular domain - NMR<BR />
+
[[1uss]], [[1ust]], [[1uhm]] – yH1 globular domain - NMR<BR />
-
[[2xd7]], [[1zr3]], [[2fxk]] – H2A macro domain – human<BR />
+
[[1ghc]] – cH1 – chicken - NMR<br />
 +
[[2xd7]], [[1zr3]], [[1zr5]], [[2fxk]] – H2A macro domain – human<BR />
[[1yd9]] – H2A macro domain – rat<BR />
[[1yd9]] – H2A macro domain – rat<BR />
[[1ku5]] – HPHA – ''Pyrococcus horikoshii''<BR />
[[1ku5]] – HPHA – ''Pyrococcus horikoshii''<BR />
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[[1bfm]] – MfHB - NMR<BR />
[[1bfm]] – MfHB - NMR<BR />
[[1f1e]] – H – ''Methanopyrus kandleri''<BR />
[[1f1e]] – H – ''Methanopyrus kandleri''<BR />
-
[[1hst]] – cH5 - chicken<BR />
+
[[1hst]] – cH5 <BR />
[[3iid]], [[3iif]] – H2A macro domain + ADP-ribose<BR />
[[3iid]], [[3iif]] – H2A macro domain + ADP-ribose<BR />
-
[[2g9a]], [[2g99]], [[2h13]] – H3 + WD-repeat protein
+
[[2g9a]], [[2g99]], [[2h13]] – H3 + WD-repeat protein<br />
 +
[[1pfb]] – H3 + polycomb protein – ''Strongylocentrus purpuratus''
===Nucleosome core===
===Nucleosome core===
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[[3qzs]], [[3qzt]] – XlH4 + nucleosome-remodeling factor subunit BPTF – ''Xenopus laevis''<BR />
[[3qzs]], [[3qzt]] – XlH4 + nucleosome-remodeling factor subunit BPTF – ''Xenopus laevis''<BR />
[[2io5]] - XlH3.1 + H4 + anti-silencing protein<BR />
[[2io5]] - XlH3.1 + H4 + anti-silencing protein<BR />
-
[[2yf7]], [[2yfw]] - H4 + H3-like centromeric protein + SCM3 – ''Kluyveromyces lactis''<BR />
+
[[2yfv]], [[2yfw]] - H4 + H3-like centromeric protein + SCM3 – ''Kluyveromyces lactis''<BR />
[[2l5a]] - yH4/H3-like centromeric protein/SCM3<BR />
[[2l5a]] - yH4/H3-like centromeric protein/SCM3<BR />
[[2jss]] - yH2A/H2B + CHZ1 – NMR<BR />
[[2jss]] - yH2A/H2B + CHZ1 – NMR<BR />
[[2hue]] - yH3 + H4 + anti-silencing protein<BR />
[[2hue]] - yH3 + H4 + anti-silencing protein<BR />
-
[[2xql]] - cH3.2 + H4 + H2A + H2B – EM
+
[[2xql]], [[3c9k]] - cH3.2 + H4 + H2A + H2B – EM
===Nucleosome core + DNA===
===Nucleosome core + DNA===
[[3an2]] – hH4 + H2A + H2B + H3-like centromeric protein + DNA<BR />
[[3an2]] – hH4 + H2A + H2B + H3-like centromeric protein + DNA<BR />
-
[[3av1]], [[2av2]] – hH3.2 + H4 + H2A + H2B + DNA<BR />
+
[[3av1]], [[2av2]], [[3av2]] – hH3.2 + H4 + H2A + H2B + DNA<BR />
[[3a6n]], [[3afa]], [[2cv5]] - hH3.1 + H4 + H2A + H2B + DNA<BR />
[[3a6n]], [[3afa]], [[2cv5]] - hH3.1 + H4 + H2A + H2B + DNA<BR />
 +
[[3ayw]], [[3aze]], [[3azf]], [[3azg]], [[3azh]] - hH3.1 (mutant) + H4 + H2A + H2B + DNA<br />
 +
[[3azi]], [[3azj]], [[3azk]], [[3azl]], [[3azm]], [[3azn]] - hH3.1 + H4 (mutant) + H2A + H2B + DNA<br />
[[3mnn]], [[3o62]], [[3lz0]], [[3lz1]], [[3lel]], [[3kuy]], [[3c1b]], [[3c1c]], [[2nzd]], [[2fj7]], [[1zbb]], [[1s32]], [[1p34]], [[1p3a]], [[1p3b]], [[1p3f]], [[1p3g]], [[1p3i]], [[1p3k]], [[1p3l]], [[1p3m]], [[1p3o]], [[1p3p]], [[1m18]], [[1m19]], [[1m1a]], [[1kx3]], [[1kx4]], [[1kx5]], [[1aoi]] - XlH3.2 + H4 + H2A + H2B + DNA<BR />
[[3mnn]], [[3o62]], [[3lz0]], [[3lz1]], [[3lel]], [[3kuy]], [[3c1b]], [[3c1c]], [[2nzd]], [[2fj7]], [[1zbb]], [[1s32]], [[1p34]], [[1p3a]], [[1p3b]], [[1p3f]], [[1p3g]], [[1p3i]], [[1p3k]], [[1p3l]], [[1p3m]], [[1p3o]], [[1p3p]], [[1m18]], [[1m19]], [[1m1a]], [[1kx3]], [[1kx4]], [[1kx5]], [[1aoi]] - XlH3.2 + H4 + H2A + H2B + DNA<BR />
[[2f8n]] - XlH3.1 + H4 + H2A + H2B + H3 + H2A macro domain + DNA<BR />
[[2f8n]] - XlH3.1 + H4 + H2A + H2B + H3 + H2A macro domain + DNA<BR />
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[[2aro]], [[1tzy]], [[1hq3]], [[2hio]], [[1hio]] - cH3 + H4 + H2A + H2B
[[2aro]], [[1tzy]], [[1hq3]], [[2hio]], [[1hio]] - cH3 + H4 + H2A + H2B
[[1eqz]] - cH3 + H4 + H2A + H2B + DNA<BR />
[[1eqz]] - cH3 + H4 + H2A + H2B + DNA<BR />
-
[[2pyo]], [[3nqb]] - H3 + H4 + H2A + H2B + DNA – ''Drosophila melanogaster''<BR />
+
[[2pyo]], [[2nqb]], [[3nqb]] - H3 + H4 + H2A + H2B + DNA – ''Drosophila melanogaster''<BR />
[[1u35]] - mH3.1 + H2A + H2B + His2A macro domain + DNA – mouse<BR />
[[1u35]] - mH3.1 + H2A + H2B + His2A macro domain + DNA – mouse<BR />
[[1f66]] - XlH3 + mH4 + hH2A + XlH2B + DNA<BR />
[[1f66]] - XlH3 + mH4 + hH2A + XlH2B + DNA<BR />

Revision as of 09:42, 1 December 2011

Template:STRUCTURE 2hue

Histones (H) are the major protein components of chromatin which help to pack the DNA in the nucleosomes. H2A, H2B, H3 and H4 are core histones while H1 and H5 are linker histones. See details in nucleosomes.

Contents

3D Structures of histone

Updated December 2011

Histone

1yqa – yH1 (mutant) – yeast – NMR
1uss, 1ust, 1uhm – yH1 globular domain - NMR
1ghc – cH1 – chicken - NMR
2xd7, 1zr3, 1zr5, 2fxk – H2A macro domain – human
1yd9 – H2A macro domain – rat
1ku5 – HPHA – Pyrococcus horikoshii
1b67, 1b6w, 1a7w, 1hta – MfHMFA – Methanococcus fervidus
1bfm – MfHB - NMR
1f1e – H – Methanopyrus kandleri
1hst – cH5
3iid, 3iif – H2A macro domain + ADP-ribose
2g9a, 2g99, 2h13 – H3 + WD-repeat protein
1pfb – H3 + polycomb protein – Strongylocentrus purpuratus

Nucleosome core

3r45 - hH4 + H3-like centromeric protein + Holliday junction recognition protein
3nqj, 3nqu - hH4 + H3-like centromeric protein
3qzs, 3qzt – XlH4 + nucleosome-remodeling factor subunit BPTF – Xenopus laevis
2io5 - XlH3.1 + H4 + anti-silencing protein
2yfv, 2yfw - H4 + H3-like centromeric protein + SCM3 – Kluyveromyces lactis
2l5a - yH4/H3-like centromeric protein/SCM3
2jss - yH2A/H2B + CHZ1 – NMR
2hue - yH3 + H4 + anti-silencing protein
2xql, 3c9k - cH3.2 + H4 + H2A + H2B – EM

Nucleosome core + DNA

3an2 – hH4 + H2A + H2B + H3-like centromeric protein + DNA
3av1, 2av2, 3av2 – hH3.2 + H4 + H2A + H2B + DNA
3a6n, 3afa, 2cv5 - hH3.1 + H4 + H2A + H2B + DNA
3ayw, 3aze, 3azf, 3azg, 3azh - hH3.1 (mutant) + H4 + H2A + H2B + DNA
3azi, 3azj, 3azk, 3azl, 3azm, 3azn - hH3.1 + H4 (mutant) + H2A + H2B + DNA
3mnn, 3o62, 3lz0, 3lz1, 3lel, 3kuy, 3c1b, 3c1c, 2nzd, 2fj7, 1zbb, 1s32, 1p34, 1p3a, 1p3b, 1p3f, 1p3g, 1p3i, 1p3k, 1p3l, 1p3m, 1p3o, 1p3p, 1m18, 1m19, 1m1a, 1kx3, 1kx4, 1kx5, 1aoi - XlH3.2 + H4 + H2A + H2B + DNA
2f8n - XlH3.1 + H4 + H2A + H2B + H3 + H2A macro domain + DNA
1zla – XlH3 + H4 + H2A + H2B + H3 + antigen + DNA
3mgp, 3mgq, 3mgr, 3mgs, 3lja, 3b6f, 3b6g - XlH3.2 + H4 + H2A + H2B + metal ion + DNA
3kxb - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) + DNA
3kwq - XlH3.2 (mutant) + H4 + H2A + H2B + DNA
3mvd - XlH3.2 + H4 + H2A + H2B + regulator of chromosome condensation + DNA
1id3 - yH3 + H4 + H2A + H2B + DNA
2aro, 1tzy, 1hq3, 2hio, 1hio - cH3 + H4 + H2A + H2B 1eqz - cH3 + H4 + H2A + H2B + DNA
2pyo, 2nqb, 3nqb - H3 + H4 + H2A + H2B + DNA – Drosophila melanogaster
1u35 - mH3.1 + H2A + H2B + His2A macro domain + DNA – mouse
1f66 - XlH3 + mH4 + hH2A + XlH2B + DNA

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Ann Taylor, Alexander Berchansky, Karsten Theis

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