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RuBisCO

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===RuBisCO===
===RuBisCO===
-
[[3rg6]] – RBCO – Synechococcus elongatus<br />
+
[[3rg6]] – RBCO – ''Synechococcus elongatus''<br />
-
[[3qfw]] - RBCO large subunit – Rhodopseudomonas palustris<br />
+
[[3qfw]] - RBCO large subunit – ''Rhodopseudomonas palustris''<br />
-
[[1uzh]], [[1gk8]] – CrRBCO – Chlamydomonas reinhardtii<br />
+
[[1uzh]], [[1gk8]] – CrRBCO – ''Chlamydomonas reinhardtii''<br />
[[1uw9]], [[1uwa]] – CrRBCO (mutant) <br />
[[1uw9]], [[1uwa]] – CrRBCO (mutant) <br />
-
[[1svd]] – RBCD – Halothiobacillus neapolitanus<br />
+
[[1svd]] – RBCD – ''Halothiobacillus neapolitanus''<br />
-
[[1bxn]] – RBCO – Cupriavidus necator<br />
+
[[1bxn]] – RBCO – ''Cupriavidus necator''<br />
[[1aus]] - spRBCO – spinach<br />
[[1aus]] - spRBCO – spinach<br />
-
[[1rba]] - RrRBCO (mutant) – Rhododpirillum rubrum<br />
+
[[1rba]] - RrRBCO (mutant) – ''Rhododpirillum rubrum''<br />
[[5rub]] - RrRBCO<br />
[[5rub]] - RrRBCO<br />
[[2wvw]] – RBCO – Anabena – Cryo EM<br />
[[2wvw]] – RBCO – Anabena – Cryo EM<br />
-
[[2vdh]], [[2vdi]], [[2v67]], [[2v68]], [[2v63]], [[2v69]], [[2v6a]] - CrRBCO (mutant) – Chlamydomonas reinhardtii<br />
+
[[2vdh]], [[2vdi]], [[2v67]], [[2v68]], [[2v63]], [[2v69]], [[2v6a]] - CrRBCO (mutant) <br />
[[1mlv]] - pRBCO LSMT – pea<br />
[[1mlv]] - pRBCO LSMT – pea<br />
-
[[2cxe]], [[2cwx]] – PhRBCO]] - Pyrococcus horikoshii<br />
+
[[2cxe]], [[2cwx]] – PhRBCO]] - ''Pyrococcus horikoshii''<br />
[[1uzd]] – CrRBCO/spRBCO
[[1uzd]] – CrRBCO/spRBCO
===RuBisCO complex with inhibitor 2-CABP===
===RuBisCO complex with inhibitor 2-CABP===
-
[[3kdn]], [[3a12]] – TkRBCO III + 2-CABP – Thermococcus kodakaraensis<br />
+
[[3kdn]], [[3a12]] – TkRBCO III + 2-CABP – ''Thermococcus kodakaraensis''<br />
[[3kdo]], [[3a13]] - TkRBCO III (mutant) + 2-CABP<br />
[[3kdo]], [[3a13]] - TkRBCO III (mutant) + 2-CABP<br />
[[1ir2]] - CrRBCO + 2-CABP <br />
[[1ir2]] - CrRBCO + 2-CABP <br />
Line 32: Line 32:
[[1ir1]] - spRBCO + 2-CABP + CO2 + Mg<br />
[[1ir1]] - spRBCO + 2-CABP + CO2 + Mg<br />
[[1wdd]] – RBCO + 2-CABP – rice<br />
[[1wdd]] – RBCO + 2-CABP – rice<br />
-
[[1bwv]] - RBCO + 2-CABP – Galdieria partita<br />
+
[[1bwv]] - RBCO + 2-CABP – ''Galdieria partita''<br />
===RuBisCO complex with product===
===RuBisCO complex with product===
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===RuBisCO complex with substrate===
===RuBisCO complex with substrate===
-
[[1rcx]], [[1rxo]] – spRBCO + ribulose-1]], [[5-bisphosphate<br />
+
[[1rcx]], [[1rxo]] – spRBCO + ribulose-1,5-bisphosphate<br />
===RuBisCO complexes===
===RuBisCO complexes===

Revision as of 09:42, 28 August 2011

PDB ID 1rcx

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Spinach RuBisCO complex with substrate ribulose-1,5- bisphosphate, 1rcx
Ligands:
Activity: Ribulose-bisphosphate carboxylase, with EC number 4.1.1.39
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml



Ribulose-1,5-bisphosphate carboxylase oxegenase – RuBisCO (RBCD) catalyzes the first step in carbon fixation. RBCD carboxylates or oxygenates ribulose-1,5-bisphosphate with CO2 or O2. RBCD usually consists of a large chain (LSMT – large subunit methyltrasferase) and small chain. 2-carboxylarabinitol-1,5-bisphosphate (2-CABP) is an inhibitor of RCBD.

Contents

3D Structures of RuBisCO

RuBisCO

3rg6 – RBCO – Synechococcus elongatus
3qfw - RBCO large subunit – Rhodopseudomonas palustris
1uzh, 1gk8 – CrRBCO – Chlamydomonas reinhardtii
1uw9, 1uwa – CrRBCO (mutant)
1svd – RBCD – Halothiobacillus neapolitanus
1bxn – RBCO – Cupriavidus necator
1aus - spRBCO – spinach
1rba - RrRBCO (mutant) – Rhododpirillum rubrum
5rub - RrRBCO
2wvw – RBCO – Anabena – Cryo EM
2vdh, 2vdi, 2v67, 2v68, 2v63, 2v69, 2v6a - CrRBCO (mutant)
1mlv - pRBCO LSMT – pea
2cxe, 2cwx – PhRBCO]] - Pyrococcus horikoshii
1uzd – CrRBCO/spRBCO

RuBisCO complex with inhibitor 2-CABP

3kdn, 3a12 – TkRBCO III + 2-CABP – Thermococcus kodakaraensis
3kdo, 3a13 - TkRBCO III (mutant) + 2-CABP
1ir2 - CrRBCO + 2-CABP
1upm, 1upp, 1rbo, 3ruc - spRBCO + 2-CABP + Ca
1ir1 - spRBCO + 2-CABP + CO2 + Mg
1wdd – RBCO + 2-CABP – rice
1bwv - RBCO + 2-CABP – Galdieria partita

RuBisCO complex with product

1aa1 – spRBCO + phosphoglycerate
1rus - RrRBCO + phosphoglycerate

RuBisCO complex with substrate

1rcx, 1rxo – spRBCO + ribulose-1,5-bisphosphate

RuBisCO complexes

2h21 – pRBCO LSMT + AdoMet
2h23 - pRBCO LSMT + AdoHcy
2h2e, 1ozv, 1p0y - pRBCO LSMT + AdoMet + lysine
2h2j - pRBCO LSMT + sinefungin
2d69 – PhRBCO + sulfate
1rco - spRBCO + xylulose-diol-1,5-bisphosphate
2rus - RrRBCO + CO2 + Mg
1ej7 – RBCO + phosphate - tobacco

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alice Harmon, Joel L. Sussman, Alexander Berchansky

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