3dcl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3dcl" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:3dcl.png|left|200px]]
+
==Crystal structure of TM1086==
-
 
+
<StructureSection load='3dcl' size='340' side='right' caption='[[3dcl]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-
<!--
+
== Structural highlights ==
-
The line below this paragraph, containing "STRUCTURE_3dcl", creates the "Structure Box" on the page.
+
<table><tr><td colspan='2'>[[3dcl]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DCL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DCL FirstGlance]. <br>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
or leave the SCENE parameter empty for the default display.
+
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TM_1086 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>
-
-->
+
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dcl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dcl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dcl RCSB], [http://www.ebi.ac.uk/pdbsum/3dcl PDBsum], [http://www.topsan.org/Proteins/MCSG/3dcl TOPSAN]</span></td></tr>
-
{{STRUCTURE_3dcl| PDB=3dcl | SCENE= }}
+
<table>
-
 
+
== Evolutionary Conservation ==
-
===Crystal structure of TM1086===
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/3dcl_consurf.spt"</scriptWhenChecked>
-
[[3dcl]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DCL OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
[[Category: Chruszcz, M.]]
[[Category: Chruszcz, M.]]

Revision as of 09:48, 21 May 2014

Crystal structure of TM1086

3dcl, resolution 2.25Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3dcl"
Views
Personal tools
Navigation
Toolbox