Anthrax Lethal Factor
From Proteopedia
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Anthrax Lethal Factor is composed of four domains: | Anthrax Lethal Factor is composed of four domains: | ||
- | '''Domain I''' functions in the binding of Lethal Factor to Protective Antigen 63 (PA63), which is the membrane translocation component of Anthrax Toxin.<ref name=Collier>PMID: 14570563</ref> The actual location where <scene name='Anthrax_Lethal_Factor/Domain_1/1'>domain I</scene> interacts with PA is unknown. This domain, made up of amino acids residues 1-263, is perched above the other three domains and is connected to the rest of the domains through an abrupt turn at the end of the last helix.<ref name=Collier>PMID: 14570563</ref> Domain I consist of 12-helix bundle, packs against one face of a mixed four-stranded beta-sheet.<ref name=Collier>PMID: 14570563</ref><ref name=Pannifer AD, Wong TY, Schwarzenbacher R, Renatus M, Petosa C, Bienkowska J, Lacy DB, Collier RJ, Park S, Leppla SH, Hanna P, Liddington RC>PMID: 11700563</ref> | + | '''Domain I''' functions in the binding of Lethal Factor to Protective Antigen 63 (PA63), which is the membrane translocation component of Anthrax Toxin.<ref name=Collier>PMID: 14570563</ref> The actual location where <scene name='Anthrax_Lethal_Factor/Domain_1/1'>domain I</scene> interacts with PA is unknown. This domain, made up of amino acids residues 1-263, is perched above the other three domains and is connected to the rest of the domains through an abrupt turn at the end of the last helix.<ref name=Collier>PMID: 14570563</ref> Domain I consist of 12-helix bundle, packs against one face of a mixed four-stranded beta-sheet.<ref name=Collier>PMID: 14570563</ref> <ref name=Pannifer AD, Wong TY, Schwarzenbacher R, Renatus M, Petosa C, Bienkowska J, Lacy DB, Collier RJ, Park S, Leppla SH, Hanna P, Liddington RC>PMID: 11700563</ref> |
- | '''Domain II''' consist of residues 263-297 and 385-550; also it has a similar structure with that of B. Cereus toxin catalytic domain VIP2, which contains a NAD binding pocket. Lethal Factor domain II lacks ADP-ribosylating activity due to the lack of conserved residues.<ref name=Collier>PMID: 14570563</ref><ref name=Pannifer AD, Wong TY, Schwarzenbacher R, Renatus M, Petosa C, Bienkowska J, Lacy DB, Collier RJ, Park S, Leppla SH, Hanna P, Liddington RC>PMID: 11700563</ref> | + | '''Domain II''' consist of residues 263-297 and 385-550; also it has a similar structure with that of B. Cereus toxin catalytic domain VIP2, which contains a NAD binding pocket. Lethal Factor domain II lacks ADP-ribosylating activity due to the lack of conserved residues.<ref name=Collier>PMID: 14570563</ref> <ref name=Pannifer AD, Wong TY, Schwarzenbacher R, Renatus M, Petosa C, Bienkowska J, Lacy DB, Collier RJ, Park S, Leppla SH, Hanna P, Liddington RC>PMID: 11700563</ref> |
'''Domain III''' residues 303-383, Sequence analysis had revealed the presence of a 101-residue segment comprising five tandem repeats residues 282-382, and suggested that repeats 2-5 arose from a duplication of repeat 1. The crystal structure reveals that repeat 1 actually forms the second helix-turn element of domain II, whereas repeats 2-5 form the four helix-turn elements of the helical bundle. Required for LF activity, shares same hydrophobic surface as domain IV and its location restricts access to the active site. Also, it contributes to substrate specificity by making interactions with the substrate.<ref name=Collier>PMID: 14570563</ref><ref name=Pannifer AD, Wong TY, Schwarzenbacher R, Renatus M, Petosa C, Bienkowska J, Lacy DB, Collier RJ, Park S, Leppla SH, Hanna P, Liddington RC>PMID: 11700563</ref> | '''Domain III''' residues 303-383, Sequence analysis had revealed the presence of a 101-residue segment comprising five tandem repeats residues 282-382, and suggested that repeats 2-5 arose from a duplication of repeat 1. The crystal structure reveals that repeat 1 actually forms the second helix-turn element of domain II, whereas repeats 2-5 form the four helix-turn elements of the helical bundle. Required for LF activity, shares same hydrophobic surface as domain IV and its location restricts access to the active site. Also, it contributes to substrate specificity by making interactions with the substrate.<ref name=Collier>PMID: 14570563</ref><ref name=Pannifer AD, Wong TY, Schwarzenbacher R, Renatus M, Petosa C, Bienkowska J, Lacy DB, Collier RJ, Park S, Leppla SH, Hanna P, Liddington RC>PMID: 11700563</ref> | ||
- | '''Domain IV''' residues 552-776, consists of a nine-helix bundle packed against a four-stranded beta-sheet and contains a HExxH motif. The first six helices and the beta-sheet can be superposed with those of the metalloprotease. A zinc ion (Zn2+) is coordinated tetrahedrally by a water molecule and three protein side chains (Fig. 3), in an arrangement typical of the thermolysin family. Two coordinating residues are the histidines from the HExxH motif (His 686 and His 690) and Glu 735.<ref name=Collier>PMID: 14570563</ref><ref name=Pannifer AD, Wong TY, Schwarzenbacher R, Renatus M, Petosa C, Bienkowska J, Lacy DB, Collier RJ, Park S, Leppla SH, Hanna P, Liddington RC>PMID: 11700563</ref> | + | '''Domain IV''' residues 552-776, consists of a nine-helix bundle packed against a four-stranded beta-sheet and contains a HExxH motif. The first six helices and the beta-sheet can be superposed with those of the metalloprotease. A zinc ion (Zn2+) is coordinated tetrahedrally by a water molecule and three protein side chains (Fig. 3), in an arrangement typical of the thermolysin family. Two coordinating residues are the histidines from the HExxH motif (His 686 and His 690) and Glu 735. <scene name='Anthrax_Lethal_Factor/Domain_4_active_site/1'>TextToBeDisplayed</scene> <ref name=Collier>PMID: 14570563</ref><ref name=Pannifer AD, Wong TY, Schwarzenbacher R, Renatus M, Petosa C, Bienkowska J, Lacy DB, Collier RJ, Park S, Leppla SH, Hanna P, Liddington RC>PMID: 11700563</ref> |
Domains II, III, and IV for the binding pocket for the substrate. | Domains II, III, and IV for the binding pocket for the substrate. | ||
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==Function of Lethal Factor== | ==Function of Lethal Factor== | ||
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Revision as of 02:46, 1 December 2011
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