Biological Unit: Showing
From Proteopedia
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This article explains how to show the biological unit (biological assembly) in a scene in Proteopedia. For background, see [[Biological Unit]] and [[Asymmetric Unit]]. | This article explains how to show the biological unit (biological assembly) in a scene in Proteopedia. For background, see [[Biological Unit]] and [[Asymmetric Unit]]. | ||
| - | 1. Go to the [http://watcut.uwaterloo.ca/cgi-bin/makemultimer/ MakeMultimer Server]. | + | :1. Go to the [http://watcut.uwaterloo.ca/cgi-bin/makemultimer/ MakeMultimer Server]. |
| - | 2. Submit the [[PDB code]]. | + | :2. Submit the [[PDB code]]. |
| - | 3. Click on the mm1.pdb link to download the biological assembly PDB file. For example, if you submitted [[1hho]], there will be a link to '''1hho_mm1.pdb'''. | + | :3. Click on the mm1.pdb link to download the biological assembly PDB file. For example, if you submitted [[1hho]], there will be a link to '''1hho_mm1.pdb'''. |
:Optionally you may examine all the biological units with the links to [[FirstGlance in Jmol]]. | :Optionally you may examine all the biological units with the links to [[FirstGlance in Jmol]]. | ||
| - | 4. Upload the mm1.pdb file into Proteopedia, and use it in a molecular scene, following the instructions at [[Help:Uploading molecules]]. | + | :4. Upload the mm1.pdb file into Proteopedia, and use it in a molecular scene, following the instructions at [[Help:Uploading molecules]]. |
You can also find the MakeMultimer Server with [[FirstGlance in Jmol]]. Every page in Proteopedia titled with a [[PDB code]] has a link to FirstGlance. While viewing the [[asymmetric unit]] in FirstGlance, click on Key Resources, then on Probable Quaternary Structure, and there you will find the link to MakeMultimer. | You can also find the MakeMultimer Server with [[FirstGlance in Jmol]]. Every page in Proteopedia titled with a [[PDB code]] has a link to FirstGlance. While viewing the [[asymmetric unit]] in FirstGlance, click on Key Resources, then on Probable Quaternary Structure, and there you will find the link to MakeMultimer. | ||
Revision as of 17:33, 20 February 2012
This article explains how to show the biological unit (biological assembly) in a scene in Proteopedia. For background, see Biological Unit and Asymmetric Unit.
- 1. Go to the MakeMultimer Server.
- 2. Submit the PDB code.
- 3. Click on the mm1.pdb link to download the biological assembly PDB file. For example, if you submitted 1hho, there will be a link to 1hho_mm1.pdb.
- Optionally you may examine all the biological units with the links to FirstGlance in Jmol.
- 4. Upload the mm1.pdb file into Proteopedia, and use it in a molecular scene, following the instructions at Help:Uploading molecules.
You can also find the MakeMultimer Server with FirstGlance in Jmol. Every page in Proteopedia titled with a PDB code has a link to FirstGlance. While viewing the asymmetric unit in FirstGlance, click on Key Resources, then on Probable Quaternary Structure, and there you will find the link to MakeMultimer.
