This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3v7p
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | + | ==Crystal structure of amidohydrolase nis_0429 (target efi-500396) from Nitratiruptor sp. sb155-2== | |
| - | + | <StructureSection load='3v7p' size='340' side='right' caption='[[3v7p]], [[Resolution|resolution]] 1.35Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3v7p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nitratiruptor_sp._sb155-2 Nitratiruptor sp. sb155-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V7P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V7P FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NIS_0429 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=387092 Nitratiruptor sp. SB155-2])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v7p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v7p RCSB], [http://www.ebi.ac.uk/pdbsum/3v7p PDBsum]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [[http://www.uniprot.org/uniprot/A6Q234_NITSB A6Q234_NITSB]] Catalyzes the deamination of aminodeoxyfutalosine (AFL) into futalosine (FL), a step in the biosynthesis of menaquinone (MK, vitamin K2). To a lesser extent, can also deaminate 5'-methylthioadenosine.<ref>PMID:23972005</ref> | |
| - | + | == References == | |
| - | + | <references/> | |
| - | + | __TOC__ | |
| - | == | + | </StructureSection> |
| - | [[3v7p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | [[Category: Nitratiruptor sp. sb155-2]] |
| - | [[Category: | + | [[Category: Almo, S C]] |
| - | [[Category: Almo, S C | + | [[Category: Bhosle, R]] |
| - | [[Category: Bhosle, R | + | [[Category: Chowdhury, S]] |
| - | [[Category: Chowdhury, S | + | [[Category: Evans, B]] |
| - | [[Category: Evans, B | + | [[Category: Gerlt, J A]] |
| - | [[Category: Gerlt, J A | + | [[Category: Glenn, A Scott]] |
| - | [[Category: Glenn, A Scott | + | [[Category: Hammonds, J]] |
| - | [[Category: Hammonds, J | + | [[Category: Hillerich, B]] |
| - | [[Category: Hillerich, B | + | [[Category: Imker, H J]] |
| - | [[Category: Imker, H J | + | [[Category: Initiative, EfiEnzyme Function]] |
| - | [[Category: Initiative, EfiEnzyme Function | + | [[Category: Patskovsky, Y]] |
| - | [[Category: Patskovsky, Y | + | [[Category: Raushel, F M]] |
| - | [[Category: Raushel, F M | + | [[Category: Seidel, R D]] |
| - | [[Category: Seidel, R D | + | [[Category: Toro, R]] |
| - | [[Category: Toro, R | + | [[Category: Washington, E]] |
| - | [[Category: Washington, E | + | [[Category: Zencheck, W D]] |
| - | [[Category: Zencheck, W D | + | |
[[Category: Amidohydrolase]] | [[Category: Amidohydrolase]] | ||
[[Category: Efi]] | [[Category: Efi]] | ||
Revision as of 09:16, 4 January 2015
Crystal structure of amidohydrolase nis_0429 (target efi-500396) from Nitratiruptor sp. sb155-2
| |||||||||||
Categories: Nitratiruptor sp. sb155-2 | Almo, S C | Bhosle, R | Chowdhury, S | Evans, B | Gerlt, J A | Glenn, A Scott | Hammonds, J | Hillerich, B | Imker, H J | Initiative, EfiEnzyme Function | Patskovsky, Y | Raushel, F M | Seidel, R D | Toro, R | Washington, E | Zencheck, W D | Amidohydrolase | Efi | Enzyme function initiative | Hydrolase | Iron binding site
