3n7x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3n7x" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:3n7x.png|left|200px]]
+
==Crystal structure of Penaeus stylirostris densovirus capsid==
 +
<StructureSection load='3n7x' size='340' side='right' caption='[[3n7x]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3n7x]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Infectious_hypodermal_and_hematopoietic_necrosis_virus Infectious hypodermal and hematopoietic necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N7X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N7X FirstGlance]. <br>
 +
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
 +
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">capsid protein ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=111792 Infectious hypodermal and hematopoietic necrosis virus])</td></tr>
 +
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n7x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n7x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3n7x RCSB], [http://www.ebi.ac.uk/pdbsum/3n7x PDBsum]</span></td></tr>
 +
<table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Penaeus stylirostris densovirus (PstDNV), a pathogen of penaeid shrimp, causes significant damage to farmed and wild shrimp populations. In contrast to other parvoviruses, PstDNV probably has only one type of capsid protein that lacks the phospholipase A2 activity that has been implicated as a requirement during parvoviral host cell infection. The structure of recombinant virus-like particles, composed of 60 copies of the 37.5-kDa coat protein, the smallest parvoviral capsid protein reported thus far, was determined to 2.5-A resolution by X-ray crystallography. The structure represents the first near-atomic resolution structure within the genus Brevidensovirus. The capsid protein has a beta-barrel "jelly roll" motif similar to that found in many icosahedral viruses, including other parvoviruses. The N-terminal portion of the PstDNV coat protein adopts a "domain-swapped" conformation relative to its twofold-related neighbor similar to the insect parvovirus Galleria mellonella densovirus (GmDNV) but in stark contrast to vertebrate parvoviruses. However, most of the surface loops have little structural resemblance to any of the known parvoviral capsid proteins.
-
<!--
+
Structure of Penaeus stylirostris densovirus, a shrimp pathogen.,Kaufmann B, Bowman VD, Li Y, Szelei J, Waddell PJ, Tijssen P, Rossmann MG J Virol. 2010 Nov;84(21):11289-96. Epub 2010 Aug 11. PMID:20702621<ref>PMID:20702621</ref>
-
The line below this paragraph, containing "STRUCTURE_3n7x", creates the "Structure Box" on the page.
+
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
-
or leave the SCENE parameter empty for the default display.
+
-
-->
+
-
{{STRUCTURE_3n7x| PDB=3n7x | SCENE= }}
+
-
===Crystal structure of Penaeus stylirostris densovirus capsid===
+
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_20702621}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 20702621 is the PubMed ID number.
+
</StructureSection>
-
-->
+
-
{{ABSTRACT_PUBMED_20702621}}
+
-
 
+
-
==About this Structure==
+
-
[[3n7x]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Infectious_hypodermal_and_hematopoietic_necrosis_virus Infectious hypodermal and hematopoietic necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N7X OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:020702621</ref><references group="xtra"/>
+
[[Category: Infectious hypodermal and hematopoietic necrosis virus]]
[[Category: Infectious hypodermal and hematopoietic necrosis virus]]
[[Category: Kaufmann, B.]]
[[Category: Kaufmann, B.]]

Revision as of 10:43, 28 May 2014

Crystal structure of Penaeus stylirostris densovirus capsid

3n7x, resolution 2.50Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3n7x"
Views
Personal tools
Navigation
Toolbox