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4djk

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[[Image:4djk.png|left|200px]]
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==Structure of glutamate-GABA antiporter GadC==
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<StructureSection load='4djk' size='340' side='right' caption='[[4djk]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4djk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DJK FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4dji|4dji]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gadC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4djk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4djk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4djk RCSB], [http://www.ebi.ac.uk/pdbsum/4djk PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Food-borne hemorrhagic Escherichia coli, exemplified by the strains O157:H7 and O104:H4 (refs 1, 2), require elaborate acid-resistance systems (ARs) to survive the extremely acidic environment such as the stomach (pH approximately 2). AR2 expels intracellular protons through the decarboxylation of L-glutamate (Glu) in the cytoplasm and exchange of the reaction product gamma-aminobutyric acid (GABA) with extracellular Glu. The latter process is mediated by the Glu-GABA antiporter GadC, a representative member of the amino-acid-polyamine-organocation superfamily of membrane transporters. The functional mechanism of GadC remains largely unknown. Here we show, with the use of an in vitro proteoliposome-based assay, that GadC transports GABA/Glu only under acidic conditions, with no detectable activity at pH values higher than 6.5. We determined the crystal structure of E. coli GadC at 3.1 A resolution under basic conditions. GadC, comprising 12 transmembrane segments (TMs), exists in a closed state, with its carboxy-terminal domain serving as a plug to block an otherwise inward-open conformation. Structural and biochemical analyses reveal the essential transport residues, identify the transport path and suggest a conserved transport mechanism involving the rigid-body rotation of a helical bundle for GadC and other amino acid antiporters.
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Structure and mechanism of a glutamate-GABA antiporter.,Ma D, Lu P, Yan C, Fan C, Yin P, Wang J, Shi Y Nature. 2012 Mar 11;483(7391):632-6. doi: 10.1038/nature10917. PMID:22407317<ref>PMID:22407317</ref>
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The line below this paragraph, containing "STRUCTURE_4djk", creates the "Structure Box" on the page.
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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or leave the SCENE parameter empty for the default display.
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{{STRUCTURE_4djk| PDB=4djk | SCENE= }}
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===Structure of glutamate-GABA antiporter GadC===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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== References ==
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<!--
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_22407317}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 22407317 is the PubMed ID number.
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</StructureSection>
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{{ABSTRACT_PUBMED_22407317}}
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==About this Structure==
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[[4djk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJK OCA].
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==Reference==
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<ref group="xtra">PMID:022407317</ref><references group="xtra"/>
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Fan, C.]]
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[[Category: Fan, C]]
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[[Category: Lu, P L.]]
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[[Category: Lu, P L]]
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[[Category: Ma, D.]]
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[[Category: Ma, D]]
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[[Category: Shi, Y G.]]
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[[Category: Shi, Y G]]
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[[Category: Wang, J W.]]
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[[Category: Wang, J W]]
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[[Category: Yan, C Y.]]
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[[Category: Yan, C Y]]
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[[Category: Yin, P.]]
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[[Category: Yin, P]]
[[Category: Glutamate-gaba antiporter]]
[[Category: Glutamate-gaba antiporter]]
[[Category: Leut]]
[[Category: Leut]]
[[Category: Transport protein]]
[[Category: Transport protein]]

Revision as of 13:23, 4 January 2015

Structure of glutamate-GABA antiporter GadC

4djk, resolution 3.10Å

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