4aqy

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[[Image:4aqy.jpg|left|200px]]
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==Structure of ribsome-apramycin complexes==
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<StructureSection load='4aqy' size='340' side='right' caption='[[4aqy]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4aqy]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AQY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AQY FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AM2:APRAMYCIN'>AM2</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
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<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ab3|1ab3]], [[1an7|1an7]], [[1cqm|1cqm]], [[1cqn|1cqn]], [[1dv4|1dv4]], [[1eg0|1eg0]], [[1emw|1emw]], [[1fjg|1fjg]], [[1fka|1fka]], [[1gix|1gix]], [[1hnw|1hnw]], [[1hnx|1hnx]], [[1hnz|1hnz]], [[1hr0|1hr0]], [[1i94|1i94]], [[1i95|1i95]], [[1i96|1i96]], [[1i97|1i97]], [[1ibk|1ibk]], [[1ibl|1ibl]], [[1ibm|1ibm]], [[1j5e|1j5e]], [[1jgo|1jgo]], [[1jgp|1jgp]], [[1jgq|1jgq]], [[1kuq|1kuq]], [[1l1u|1l1u]], [[1lou|1lou]], [[1mvr|1mvr]], [[1n32|1n32]], [[1n33|1n33]], [[1n34|1n34]], [[1n36|1n36]], [[1pns|1pns]], [[1pnx|1pnx]], [[1qd7|1qd7]], [[1qjh|1qjh]], [[1qkf|1qkf]], [[1qkh|1qkh]], [[1ris|1ris]], [[1rss|1rss]], [[1twt|1twt]], [[1vox|1vox]], [[1voz|1voz]], [[1xmo|1xmo]], [[1xmq|1xmq]], [[1xnq|1xnq]], [[1xnr|1xnr]], [[1yl4|1yl4]], [[2b64|2b64]], [[2b9m|2b9m]], [[2b9o|2b9o]], [[2bvz|2bvz]], [[2bxj|2bxj]], [[2f4v|2f4v]], [[2j00|2j00]], [[2j02|2j02]], [[2jl7|2jl7]], [[2uu9|2uu9]], [[2uua|2uua]], [[2uub|2uub]], [[2uuc|2uuc]], [[2uxb|2uxb]], [[2uxc|2uxc]], [[2uxd|2uxd]], [[2v46|2v46]], [[2v48|2v48]], [[2vqe|2vqe]], [[2vqf|2vqf]], [[2wdg|2wdg]], [[2wdh|2wdh]], [[2wdk|2wdk]], [[2wdm|2wdm]], [[2wh1|2wh1]], [[2wh3|2wh3]], [[2wrn|2wrn]], [[2wrq|2wrq]], [[2x9r|2x9r]], [[2x9t|2x9t]], [[2xfz|2xfz]], [[2xg1|2xg1]], [[2xqd|2xqd]], [[2xsy|2xsy]], [[2xuy|2xuy]], [[2y0u|2y0u]], [[2y0w|2y0w]], [[2y0y|2y0y]], [[2y10|2y10]], [[2y12|2y12]], [[2y14|2y14]], [[2y18|2y18]], [[3zvo|3zvo]], [[4abr|4abr]]</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4aqy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4aqy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4aqy RCSB], [http://www.ebi.ac.uk/pdbsum/4aqy PDBsum]</span></td></tr>
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<table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Aminoglycosides are potent antibacterials, but therapy is compromised by substantial toxicity causing, in particular, irreversible hearing loss. Aminoglycoside ototoxicity occurs both in a sporadic dose-dependent and in a genetically predisposed fashion. We recently have developed a mechanistic concept that postulates a key role for the mitochondrial ribosome (mitoribosome) in aminoglycoside ototoxicity. We now report on the surprising finding that apramycin, a structurally unique aminoglycoside licensed for veterinary use, shows little activity toward eukaryotic ribosomes, including hybrid ribosomes which were genetically engineered to carry the mitoribosomal aminoglycoside-susceptibility A1555G allele. In ex vivo cultures of cochlear explants and in the in vivo guinea pig model of chronic ototoxicity, apramycin causes only little hair cell damage and hearing loss but it is a potent antibacterial with good activity against a range of clinical pathogens, including multidrug-resistant Mycobacterium tuberculosis. These data provide proof of concept that antibacterial activity can be dissected from aminoglycoside ototoxicity. Together with 3D structures of apramycin-ribosome complexes at 3.5-A resolution, our results provide a conceptual framework for further development of less toxic aminoglycosides by hypothesis-driven chemical synthesis.
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{{STRUCTURE_4aqy| PDB=4aqy | SCENE= }}
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Dissociation of antibacterial activity and aminoglycoside ototoxicity in the 4-monosubstituted 2-deoxystreptamine apramycin.,Matt T, Ng CL, Lang K, Sha SH, Akbergenov R, Shcherbakov D, Meyer M, Duscha S, Xie J, Dubbaka SR, Perez-Fernandez D, Vasella A, Ramakrishnan V, Schacht J, Bottger EC Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10984-9. Epub 2012 Jun 14. PMID:22699498<ref>PMID:22699498</ref>
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===Structure of ribsome-apramycin complexes===
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_22699498}}
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==See Also==
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*[[Ribosomal protein THX|Ribosomal protein THX]]
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==About this Structure==
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*[[Ribosome 3D structures|Ribosome 3D structures]]
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[[4aqy]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AQY OCA].
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== References ==
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<references/>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:022699498</ref><references group="xtra"/>
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</StructureSection>
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
[[Category: Akbergenov, R.]]
[[Category: Akbergenov, R.]]

Revision as of 07:18, 5 June 2014

Structure of ribsome-apramycin complexes

4aqy, resolution 3.50Å

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