This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1bfr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1bfr.gif|left|200px]]<br /><applet load="1bfr" size="350" color="white" frame="true" align="right" spinBox="true"
+
[[Image:1bfr.gif|left|200px]]
-
caption="1bfr, resolution 2.94&Aring;" />
+
 
-
'''IRON STORAGE AND ELECTRON TRANSPORT'''<br />
+
{{Structure
 +
|PDB= 1bfr |SIZE=350|CAPTION= <scene name='initialview01'>1bfr</scene>, resolution 2.94&Aring;
 +
|SITE= <scene name='pdbsite=MA:Binuclear+Metal-Binding+Site'>MA</scene>, <scene name='pdbsite=MB:Binuclear+Metal-Binding+Site'>MB</scene>, <scene name='pdbsite=MC:Binuclear+Metal-Binding+Site'>MC</scene>, <scene name='pdbsite=MD:Binuclear+Metal-Binding+Site'>MD</scene>, <scene name='pdbsite=ME:Binuclear+Metal-Binding+Site'>ME</scene>, <scene name='pdbsite=MF:Binuclear+Metal-Binding+Site'>MF</scene>, <scene name='pdbsite=MG:Binuclear+Metal-Binding+Site'>MG</scene>, <scene name='pdbsite=MH:Binuclear+Metal-Binding+Site'>MH</scene>, <scene name='pdbsite=MI:Binuclear+Metal-Binding+Site'>MI</scene>, <scene name='pdbsite=MJ:Binuclear+Metal-Binding+Site'>MJ</scene>, <scene name='pdbsite=MK:Binuclear+Metal-Binding+Site'>MK</scene>, <scene name='pdbsite=ML:Binuclear+Metal-Binding+Site'>ML</scene>, <scene name='pdbsite=MM:Binuclear+Metal-Binding+Site'>MM</scene>, <scene name='pdbsite=MN:Binuclear+Metal-Binding+Site'>MN</scene>, <scene name='pdbsite=MO:Binuclear+Metal-Binding+Site'>MO</scene>, <scene name='pdbsite=MP:Binuclear+Metal-Binding+Site'>MP</scene>, <scene name='pdbsite=MQ:Binuclear+Metal-Binding+Site'>MQ</scene>, <scene name='pdbsite=MR:Binuclear+Metal-Binding+Site'>MR</scene>, <scene name='pdbsite=MS:Binuclear+Metal-Binding+Site'>MS</scene>, <scene name='pdbsite=MT:Binuclear+Metal-Binding+Site'>MT</scene>, <scene name='pdbsite=MU:Binuclear+Metal-Binding+Site'>MU</scene>, <scene name='pdbsite=MV:Binuclear+Metal-Binding+Site'>MV</scene>, <scene name='pdbsite=MW:Binuclear+Metal-Binding+Site'>MW</scene> and <scene name='pdbsite=MX:Binuclear+Metal-Binding+Site'>MX</scene>
 +
|LIGAND= <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene> and <scene name='pdbligand=HEM:PROTOPORPHYRIN IX CONTAINING FE'>HEM</scene>
 +
|ACTIVITY=
 +
|GENE=
 +
}}
 +
 
 +
'''IRON STORAGE AND ELECTRON TRANSPORT'''
 +
 
==Overview==
==Overview==
Line 7: Line 16:
==About this Structure==
==About this Structure==
-
1BFR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=MN:'>MN</scene> and <scene name='pdbligand=HEM:'>HEM</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=MA:Binuclear+Metal-Binding+Site'>MA</scene>, <scene name='pdbsite=MB:Binuclear+Metal-Binding+Site'>MB</scene>, <scene name='pdbsite=MC:Binuclear+Metal-Binding+Site'>MC</scene>, <scene name='pdbsite=MD:Binuclear+Metal-Binding+Site'>MD</scene>, <scene name='pdbsite=ME:Binuclear+Metal-Binding+Site'>ME</scene>, <scene name='pdbsite=MF:Binuclear+Metal-Binding+Site'>MF</scene>, <scene name='pdbsite=MG:Binuclear+Metal-Binding+Site'>MG</scene>, <scene name='pdbsite=MH:Binuclear+Metal-Binding+Site'>MH</scene>, <scene name='pdbsite=MI:Binuclear+Metal-Binding+Site'>MI</scene>, <scene name='pdbsite=MJ:Binuclear+Metal-Binding+Site'>MJ</scene>, <scene name='pdbsite=MK:Binuclear+Metal-Binding+Site'>MK</scene>, <scene name='pdbsite=ML:Binuclear+Metal-Binding+Site'>ML</scene>, <scene name='pdbsite=MM:Binuclear+Metal-Binding+Site'>MM</scene>, <scene name='pdbsite=MN:Binuclear+Metal-Binding+Site'>MN</scene>, <scene name='pdbsite=MO:Binuclear+Metal-Binding+Site'>MO</scene>, <scene name='pdbsite=MP:Binuclear+Metal-Binding+Site'>MP</scene>, <scene name='pdbsite=MQ:Binuclear+Metal-Binding+Site'>MQ</scene>, <scene name='pdbsite=MR:Binuclear+Metal-Binding+Site'>MR</scene>, <scene name='pdbsite=MS:Binuclear+Metal-Binding+Site'>MS</scene>, <scene name='pdbsite=MT:Binuclear+Metal-Binding+Site'>MT</scene>, <scene name='pdbsite=MU:Binuclear+Metal-Binding+Site'>MU</scene>, <scene name='pdbsite=MV:Binuclear+Metal-Binding+Site'>MV</scene>, <scene name='pdbsite=MW:Binuclear+Metal-Binding+Site'>MW</scene> and <scene name='pdbsite=MX:Binuclear+Metal-Binding+Site'>MX</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BFR OCA].
+
1BFR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BFR OCA].
==Reference==
==Reference==
-
Structure of a monoclinic crystal from of cyctochrome b1 (Bacterioferritin) from E. coli., Dautant A, Meyer JB, Yariv J, Precigoux G, Sweet RM, Kalb AJ, Frolow F, Acta Crystallogr D Biol Crystallogr. 1998 Jan 1;54(Pt 1):16-24. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9867433 9867433]
+
Structure of a monoclinic crystal from of cyctochrome b1 (Bacterioferritin) from E. coli., Dautant A, Meyer JB, Yariv J, Precigoux G, Sweet RM, Kalb AJ, Frolow F, Acta Crystallogr D Biol Crystallogr. 1998 Jan 1;54(Pt 1):16-24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9867433 9867433]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Single protein]]
Line 25: Line 34:
[[Category: iron storage]]
[[Category: iron storage]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 11:54:55 2008''
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 10:10:21 2008''

Revision as of 08:10, 20 March 2008


PDB ID 1bfr

Drag the structure with the mouse to rotate
, resolution 2.94Å
Sites: , , , , , , , , , , , , , , , , , , , , , , and
Ligands: and
Coordinates: save as pdb, mmCIF, xml



IRON STORAGE AND ELECTRON TRANSPORT


Overview

Crystals of E. coli cytochrome b1, alias bacterioferritin, were grown fr om a low ionic strength solution. The resulting monoclniic P21 structure was solved by molecular replacement and refined using noncrystallographi c symmetries applied to the fundamental unit, consisting of two protein subunits and a single haem. From the Patterson self-rotation results it was shown that the asymmetric unit of the monoclinic crystal consists of 12 such dimers and corresponds to a complete, nearly spherical, molecule of bacterioferritin (M4 = 450 kDa) of 432 point-group symmetry. It is thus the most symmetrical cytochrome. As previously determined for the tetragonal form, the haem is located in a special position on a local twofold axis of the dimer. A bimetal centre is also observed within the four-helix bundle of each monomer; a metal-binding site is located on the fourfold axis.

About this Structure

1BFR is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.

Reference

Structure of a monoclinic crystal from of cyctochrome b1 (Bacterioferritin) from E. coli., Dautant A, Meyer JB, Yariv J, Precigoux G, Sweet RM, Kalb AJ, Frolow F, Acta Crystallogr D Biol Crystallogr. 1998 Jan 1;54(Pt 1):16-24. PMID:9867433

Page seeded by OCA on Thu Mar 20 10:10:21 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools