1e0e
From Proteopedia
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| - | [[Image:1e0e.gif|left|200px]] | + | [[Image:1e0e.gif|left|200px]] |
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| - | '''N-TERMINAL ZINC-BINDING HHCC DOMAIN OF HIV-2 INTEGRASE''' | + | {{Structure |
| + | |PDB= 1e0e |SIZE=350|CAPTION= <scene name='initialview01'>1e0e</scene> | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=ZN:ZINC ION'>ZN</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
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| + | '''N-TERMINAL ZINC-BINDING HHCC DOMAIN OF HIV-2 INTEGRASE''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1E0E is a [ | + | 1E0E is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Viruses Viruses]. This structure supersedes the now removed PDB entry 1AUB. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E0E OCA]. |
==Reference== | ==Reference== | ||
| - | Refined solution structure of the dimeric N-terminal HHCC domain of HIV-2 integrase., Eijkelenboom AP, van den Ent FM, Wechselberger R, Plasterk RH, Kaptein R, Boelens R, J Biomol NMR. 2000 Oct;18(2):119-28. PMID:[http:// | + | Refined solution structure of the dimeric N-terminal HHCC domain of HIV-2 integrase., Eijkelenboom AP, van den Ent FM, Wechselberger R, Plasterk RH, Kaptein R, Boelens R, J Biomol NMR. 2000 Oct;18(2):119-28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11101216 11101216] |
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Viruses]] | [[Category: Viruses]] | ||
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[[Category: Plasterk, R H.A.]] | [[Category: Plasterk, R H.A.]] | ||
[[Category: ZN]] | [[Category: ZN]] | ||
| - | [[Category: | + | [[Category: aid]] |
[[Category: dimer]] | [[Category: dimer]] | ||
[[Category: helix-turn-helix motif]] | [[Category: helix-turn-helix motif]] | ||
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[[Category: zinc-binding protein]] | [[Category: zinc-binding protein]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 10:47:27 2008'' |
Revision as of 08:47, 20 March 2008
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| Coordinates: | save as pdb, mmCIF, xml | ||||||
N-TERMINAL ZINC-BINDING HHCC DOMAIN OF HIV-2 INTEGRASE
Overview
The solution structure of the dimeric N-terminal domain of HIV-2 integrase (residues 1-55, named IN(1-55)) has been determined using NMR spectroscopy. The structure of the monomer, which was already reported previously [Eijkelenboom et al. (1997) Curr. Biol., 7, 739-746], consists of four alpha-helices and is well defined. Helices alpha1, alpha2 and alpha3 form a three-helix bundle that is stabilized by zinc binding to His12, His16, Cys40 and Cys43. The dimer interface is formed by the N-terminal tail and the first half of helix alpha3. The orientation of the two monomeric units with respect to each other shows considerable variation. 15N relaxation studies have been used to characterize the nature of the intermonomeric disorder. Comparison of the dimer interface with that of the well-defined dimer interface of HIV-1 IN(1-55) shows that the latter is stabilized by additional hydrophobic interactions and a potential salt bridge. Similar interactions cannot be formed in HIV-2 IN(1-55) [Cai et al. (1997) Nat. Struct. Biol., 4, 567-577], where the corresponding residues are positively charged and neutral ones.
About this Structure
1E0E is a Single protein structure of sequence from Viruses. This structure supersedes the now removed PDB entry 1AUB. Full crystallographic information is available from OCA.
Reference
Refined solution structure of the dimeric N-terminal HHCC domain of HIV-2 integrase., Eijkelenboom AP, van den Ent FM, Wechselberger R, Plasterk RH, Kaptein R, Boelens R, J Biomol NMR. 2000 Oct;18(2):119-28. PMID:11101216
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