This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1gvy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1gvy.gif|left|200px]]<br /><applet load="1gvy" size="350" color="white" frame="true" align="right" spinBox="true"
+
[[Image:1gvy.gif|left|200px]]
-
caption="1gvy, resolution 1.70&Aring;" />
+
 
-
'''SUBSTRATE DISTORSION BY BETA-MANNANASE FROM PSEUDOMONAS CELLULOSA'''<br />
+
{{Structure
 +
|PDB= 1gvy |SIZE=350|CAPTION= <scene name='initialview01'>1gvy</scene>, resolution 1.70&Aring;
 +
|SITE= <scene name='pdbsite=NIN:Trs+Binding+Site+For+Chain+A'>NIN</scene>
 +
|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NIN:DINITROPHENYLENE'>NIN</scene>, <scene name='pdbligand=MBF:2-DEOXY-2-FLUORO-BETA-D-MANNOSE'>MBF</scene> and <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>
 +
|ACTIVITY= [http://en.wikipedia.org/wiki/Mannan_endo-1,4-beta-mannosidase Mannan endo-1,4-beta-mannosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.78 3.2.1.78]
 +
|GENE=
 +
}}
 +
 
 +
'''SUBSTRATE DISTORSION BY BETA-MANNANASE FROM PSEUDOMONAS CELLULOSA'''
 +
 
==About this Structure==
==About this Structure==
-
1GVY is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Cellvibrio_japonicus Cellvibrio japonicus] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=NA:'>NA</scene>, <scene name='pdbligand=NIN:'>NIN</scene>, <scene name='pdbligand=MBF:'>MBF</scene> and <scene name='pdbligand=TRS:'>TRS</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Mannan_endo-1,4-beta-mannosidase Mannan endo-1,4-beta-mannosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.78 3.2.1.78] Known structural/functional Site: <scene name='pdbsite=NIN:Trs+Binding+Site+For+Chain+A'>NIN</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GVY OCA].
+
1GVY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Cellvibrio_japonicus Cellvibrio japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GVY OCA].
==Reference==
==Reference==
-
Substrate distortion by a beta-mannanase: snapshots of the Michaelis and covalent-intermediate complexes suggest a B(2,5) conformation for the transition state., Ducros VM, Zechel DL, Murshudov GN, Gilbert HJ, Szabo L, Stoll D, Withers SG, Davies GJ, Angew Chem Int Ed Engl. 2002 Aug 2;41(15):2824-7. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12203498 12203498]
+
Substrate distortion by a beta-mannanase: snapshots of the Michaelis and covalent-intermediate complexes suggest a B(2,5) conformation for the transition state., Ducros VM, Zechel DL, Murshudov GN, Gilbert HJ, Szabo L, Stoll D, Withers SG, Davies GJ, Angew Chem Int Ed Engl. 2002 Aug 2;41(15):2824-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12203498 12203498]
[[Category: Cellvibrio japonicus]]
[[Category: Cellvibrio japonicus]]
[[Category: Mannan endo-1,4-beta-mannosidase]]
[[Category: Mannan endo-1,4-beta-mannosidase]]
Line 29: Line 38:
[[Category: mannanase]]
[[Category: mannanase]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:54:35 2008''
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 11:28:43 2008''

Revision as of 09:28, 20 March 2008


PDB ID 1gvy

Drag the structure with the mouse to rotate
, resolution 1.70Å
Sites:
Ligands: , , , and
Activity: Mannan endo-1,4-beta-mannosidase, with EC number 3.2.1.78
Coordinates: save as pdb, mmCIF, xml



SUBSTRATE DISTORSION BY BETA-MANNANASE FROM PSEUDOMONAS CELLULOSA


About this Structure

1GVY is a Single protein structure of sequence from Cellvibrio japonicus. Full crystallographic information is available from OCA.

Reference

Substrate distortion by a beta-mannanase: snapshots of the Michaelis and covalent-intermediate complexes suggest a B(2,5) conformation for the transition state., Ducros VM, Zechel DL, Murshudov GN, Gilbert HJ, Szabo L, Stoll D, Withers SG, Davies GJ, Angew Chem Int Ed Engl. 2002 Aug 2;41(15):2824-7. PMID:12203498

Page seeded by OCA on Thu Mar 20 11:28:43 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools