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3vnl

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[[Image:3vnl.jpg|left|200px]]
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==Crystal structures of D-Psicose 3-epimerase with D-tagatose from Clostridium cellulolyticum H10==
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<StructureSection load='3vnl' size='340' side='right' caption='[[3vnl]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3vnl]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_cellulolyticum Clostridium cellulolyticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VNL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VNL FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TAG:D-TAGATOSE'>TAG</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vni|3vni]], [[3vnj|3vnj]], [[3vnk|3vnk]], [[3vnm|3vnm]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Ccel_0941 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1521 Clostridium cellulolyticum])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vnl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vnl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vnl RCSB], [http://www.ebi.ac.uk/pdbsum/3vnl PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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D-psicose 3-epimerase (DPEase) is demonstrated to be useful in the bioproduction of D-psicose, a rare hexose sugar, from D-fructose, found plenty in nature. Clostridium cellulolyticum H10 has recently been identified as a DPEase that can epimerize D-fructose to yield D-psicose with a much higher conversion rate when compared with the conventionally used DTEase. In this study, the crystal structure of the C. cellulolyticum DPEase was determined. The enzyme assembles into a tetramer and each subunit shows a (beta/alpha)(8) TIM barrel fold with a Mn(2+) metal ion in the active site. Additional crystal structures of the enzyme in complex with substrates/products (D-psicose, D-fructose, D-tagatose and D-sorbose) were also determined. From the complex structures of C. cellulolyticum DPEase with D-psicose and D-fructose, the enzyme has much more interactions with D-psicose than D-fructose by forming more hydrogen bonds between the substrate and the active site residues. Accordingly, based on these ketohexose-bound complex structures, a C3-O3 proton-exchange mechanism for the conversion between D-psicose and D-fructose is proposed here. These results provide a clear idea for the deprotonation/protonation roles of E150 and E244 in catalysis.
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{{STRUCTURE_3vnl| PDB=3vnl | SCENE= }}
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Crystal structures of D-psicose 3-epimerase from Clostridium cellulolyticum H10 and its complex with ketohexose sugars.,Chan HC, Zhu Y, Hu Y, Ko TP, Huang CH, Ren F, Chen CC, Ma Y, Guo RT, Sun Y Protein Cell. 2012 Feb;3(2):123-31. Epub 2012 Mar 17. PMID:22426981<ref>PMID:22426981</ref>
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===Crystal structures of D-Psicose 3-epimerase with D-tagatose from Clostridium cellulolyticum H10===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_22426981}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[3vnl]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_cellulolyticum Clostridium cellulolyticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VNL OCA].
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</StructureSection>
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==Reference==
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<ref group="xtra">PMID:022426981</ref><references group="xtra"/>
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[[Category: Clostridium cellulolyticum]]
[[Category: Clostridium cellulolyticum]]
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[[Category: Chan, H C.]]
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[[Category: Chan, H C]]
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[[Category: Chen, C C.]]
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[[Category: Chen, C C]]
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[[Category: Guo, R T.]]
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[[Category: Guo, R T]]
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[[Category: Hu, Y.]]
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[[Category: Hu, Y]]
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[[Category: Huang, C H.]]
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[[Category: Huang, C H]]
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[[Category: Ko, T P.]]
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[[Category: Ko, T P]]
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[[Category: Ren, F.]]
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[[Category: Ren, F]]
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[[Category: Sun, Y.]]
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[[Category: Sun, Y]]
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[[Category: Zhu, Y.]]
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[[Category: Zhu, Y]]
[[Category: D-psicose 3-epimerase]]
[[Category: D-psicose 3-epimerase]]
[[Category: Isomerase]]
[[Category: Isomerase]]
[[Category: Ketohexose]]
[[Category: Ketohexose]]
[[Category: Tim barrel]]
[[Category: Tim barrel]]

Revision as of 10:37, 4 January 2015

Crystal structures of D-Psicose 3-epimerase with D-tagatose from Clostridium cellulolyticum H10

3vnl, resolution 2.15Å

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